HHsearch alignment for GI: 254780382 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=99.94 E-value=4.8e-26 Score=186.93 Aligned_cols=304 Identities=19% Similarity=0.309 Sum_probs=204.8
Q ss_pred HHHHHHH---CCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCCCCCCC
Q ss_conf 9999997---699-79998279851789999999999860652147827999828589999999998-741023332210
Q gi|254780382|r 30 KTIPLVL---QRH-DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVA 104 (465)
Q Consensus 30 ~~i~~~l---~g~-dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~~~~~~~l~~~ 104 (465)
T Consensus 5 ~vLP~Lr~al~~~~~vvL~APpGAGKsT~~PL---aLL~~p-W~-~~~kIimLEPRRlAAR~~A~rlA~~LgE~VG~tVG 79 (858)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPL---ALLDAP-WL-IGGKIIMLEPRRLAARSAAQRLASQLGEEVGDTVG 79 (858)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH---HHHHHH-HH-CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 67699999861176506416722471105889---976626-43-48807874744789999999999970889886204
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC-CC--CCC--CHHHHHHHHHHHCCC--
Q ss_conf 00012222222222210112210221023333200000012100102551000-00--001--003578875431022--
Q gi|254780382|r 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR-ML--DMG--FIPYIQNITSLVPFT-- 177 (465)
Q Consensus 105 ~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~-l~--~~g--f~~~i~~i~~~~~~~-- 177 (465)
T Consensus 80 yRvR~enkVs~~TRl------EvVTEGiLTRMlQ~DP-~L~GVg~liFDEFHERsL~aDLaLALaLdV---Qs~LRdDPP 149 (858)
T TIGR01970 80 YRVRLENKVSARTRL------EVVTEGILTRMLQDDP-ELEGVGLLIFDEFHERSLDADLALALALDV---QSALRDDPP 149 (858)
T ss_pred EEEECCCCCCCCCCE------EEEECCHHHHHCCCCC-CCCCCCEEEECHHHHHHHHHHHHHHHHHHH---HHHHCCCCC
T ss_conf 057711325877545------7872326877401688-845352323110224346788999998853---343106864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC---HHHHHHHHCCCCCCCCCE----EE
Q ss_conf 2223334321122221111222221001344432123464211111-222211---024443210122345650----67
Q gi|254780382|r 178 RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVA-TYAQYS---KKCALLQQLLQSQDTMKN----GI 249 (465)
Q Consensus 178 ~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~-~~~~~~---~k~~~l~~l~~~~~~~~k----~i 249 (465)
T Consensus 150 Lkil~MSATLdg~--rL-s~LL~~Ap~v--~S~GR~fP-Ve~rY~~P~~~~e~l~~~~~r~v~~~La~~--~GSGPqd~L 221 (858)
T TIGR01970 150 LKILIMSATLDGE--RL-SSLLPDAPVV--ESEGRSFP-VEIRYLPPLREDERLEDRVSRAVEHALAEE--SGSGPQDVL 221 (858)
T ss_pred CEEHHCCCCCHHH--HH-HHHCCCCCEE--EECCCCCC-EECCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCHH
T ss_conf 0000000263279--99-9743302642--00787876-110227678755533478999999999616--788633010
Q ss_pred EEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE------
Q ss_conf 762134432222222222-----332222234542033323444420135523888846646440788765002------
Q gi|254780382|r 250 IFCNQKKNVVNLCHSLEK-----QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF------ 318 (465)
Q Consensus 250 IF~~t~~~~~~l~~~L~~-----~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI------ 318 (465)
T Consensus 222 vFLPG~aEI~Rv~~~L~e~L~~rs~v~lcPLYG~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRvViDsGl~R 301 (858)
T TIGR01970 222 VFLPGQAEIRRVQEQLAERLDARSEVLLCPLYGELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRVVIDSGLAR 301 (858)
T ss_pred EECCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEEEEECCCCC
T ss_conf 01687778999999999975178710005767888978999870877466734342000122210017635887156556
Q ss_pred --EECCCCCHH----------HHHHHHHCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf --002467789----------988752102458885399997788899999
Q gi|254780382|r 319 --NFDVPNRAE----------NYIHRIGRTGRAGRHGKAFTLVAKEDIKHI 357 (465)
Q Consensus 319 --~~d~P~~~~----------~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~ 357 (465)
T Consensus 302 ~arFDP~sG~TRL~~~RisqASA~QRAGRAGRl-epGvc~RLw~~~q~~~l 351 (858)
T TIGR01970 302 VARFDPKSGITRLETQRISQASATQRAGRAGRL-EPGVCYRLWSEEQHKRL 351 (858)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCHHEECCCHHHHHHH
T ss_conf 763478887402445788973376512633221-11411122786898863