HHsearch alignment for GI: 254780382 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.26 E-value=0.75 Score=24.36 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=44.9
Q ss_pred EECCCCCCHH-HHHHHHHHHHHHC---------CCCCCCCCEEEEECC----CHHHHHHHHH--HHHHHCCCCCCCCCCC
Q ss_conf 9827985178-9999999999860---------652147827999828----5899999999--9874102333221000
Q gi|254780382|r 43 GIAQTGTGKT-ASFVLPMLTILEK---------GRARVRMPRTLILEP----TRELAAQVAD--NFEKYGKNYNLTVALL 106 (465)
Q Consensus 43 ~~apTGsGKT-~~~~lp~l~~l~~---------~~~~~~~~~~lil~P----treLa~Qi~~--~~~~~~~~~~l~~~~~ 106 (465)
T Consensus 101 ~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~ev 180 (333)
T TIGR02236 101 VFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFRPERIEQMAKGLARGTLQAAMELDPDEV 180 (333)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 77100786578766765532287112101100014776787689985597986257999998631113666532787777
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCC
Q ss_conf 012222222222210112210221023333200000012100102551
Q gi|254780382|r 107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE 154 (465)
Q Consensus 107 ~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDE 154 (465)
T Consensus 181 L---~nI~vARAyNS~HQmllv--e~~~~li~e~~~~~~pv~L~~VDS 223 (333)
T TIGR02236 181 L---KNIYVARAYNSNHQMLLV--EKAKELIKELKNEDKPVRLLIVDS 223 (333)
T ss_pred H---CCEEEEEEECCHHHHHHH--HHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 2---030477852631479999--999999973015799468999812