HHsearch alignment for GI: 254780382 and conserved domain: TIGR02236

>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.26  E-value=0.75  Score=24.36  Aligned_cols=107  Identities=14%  Similarity=0.186  Sum_probs=44.9

Q ss_pred             EECCCCCCHH-HHHHHHHHHHHHC---------CCCCCCCCEEEEECC----CHHHHHHHHH--HHHHHCCCCCCCCCCC
Q ss_conf             9827985178-9999999999860---------652147827999828----5899999999--9874102333221000
Q gi|254780382|r   43 GIAQTGTGKT-ASFVLPMLTILEK---------GRARVRMPRTLILEP----TRELAAQVAD--NFEKYGKNYNLTVALL  106 (465)
Q Consensus        43 ~~apTGsGKT-~~~~lp~l~~l~~---------~~~~~~~~~~lil~P----treLa~Qi~~--~~~~~~~~~~l~~~~~  106 (465)
T Consensus       101 ~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~ev  180 (333)
T TIGR02236       101 VFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFRPERIEQMAKGLARGTLQAAMELDPDEV  180 (333)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             77100786578766765532287112101100014776787689985597986257999998631113666532787777


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCC
Q ss_conf             012222222222210112210221023333200000012100102551
Q gi|254780382|r  107 IGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDE  154 (465)
Q Consensus       107 ~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDE  154 (465)
T Consensus       181 L---~nI~vARAyNS~HQmllv--e~~~~li~e~~~~~~pv~L~~VDS  223 (333)
T TIGR02236       181 L---KNIYVARAYNSNHQMLLV--EKAKELIKELKNEDKPVRLLIVDS  223 (333)
T ss_pred             H---CCEEEEEEECCHHHHHHH--HHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             2---030477852631479999--999999973015799468999812