HHsearch alignment for GI: 254780382 and conserved domain: TIGR02538

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.95  E-value=0.0011  Score=42.54  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCCCCC-CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCC-CCCCCCCCHHHHHHHH
Q ss_conf             2346421111122221-102444321012234565067762134432222222222--33222-2234542033323444
Q gi|254780382|r  213 TAETIEHCFVATYAQY-SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSV-CAIHGNIDQRSRMKIL  288 (465)
Q Consensus       213 ~~~~i~~~~~~~~~~~-~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~--~g~~v-~~lhg~l~~~~R~~~~  288 (465)
T Consensus       367 NLpGINQVnvN--pK~GLTFAaALrSFLRQ----DPDIIMVGEIRDLETAEIAiKAAqTGHLVlSTLHTNdAp----~Tl  436 (577)
T TIGR02538       367 NLPGINQVNVN--PKIGLTFAAALRSFLRQ----DPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAP----ETL  436 (577)
T ss_pred             EECCCCEECCC--CCCCCCHHHHHHHHCCC----CCCEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCHH----HHH
T ss_conf             40771512046--67887879999864068----998898706664215899999840487210100016858----999


Q ss_pred             HHHCC-CCCEEEEEHHH
Q ss_conf             42013-55238888466
Q gi|254780382|r  289 SNFKE-GTIQLMVASDL  304 (465)
Q Consensus       289 ~~F~~-g~~~vLV~Td~  304 (465)
T Consensus       437 ~RL~NMGiapFNIASSV  453 (577)
T TIGR02538       437 ARLVNMGIAPFNIASSV  453 (577)
T ss_pred             HHHHHCCCHHHHHHHHH
T ss_conf             99975384137999999