HHsearch alignment for GI: 254780382 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.95 E-value=0.0011 Score=42.54 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCCC-CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCC-CCCCCCCCHHHHHHHH
Q ss_conf 2346421111122221-102444321012234565067762134432222222222--33222-2234542033323444
Q gi|254780382|r 213 TAETIEHCFVATYAQY-SKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSV-CAIHGNIDQRSRMKIL 288 (465)
Q Consensus 213 ~~~~i~~~~~~~~~~~-~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~--~g~~v-~~lhg~l~~~~R~~~~ 288 (465)
T Consensus 367 NLpGINQVnvN--pK~GLTFAaALrSFLRQ----DPDIIMVGEIRDLETAEIAiKAAqTGHLVlSTLHTNdAp----~Tl 436 (577)
T TIGR02538 367 NLPGINQVNVN--PKIGLTFAAALRSFLRQ----DPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAP----ETL 436 (577)
T ss_pred EECCCCEECCC--CCCCCCHHHHHHHHCCC----CCCEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCHH----HHH
T ss_conf 40771512046--67887879999864068----998898706664215899999840487210100016858----999
Q ss_pred HHHCC-CCCEEEEEHHH
Q ss_conf 42013-55238888466
Q gi|254780382|r 289 SNFKE-GTIQLMVASDL 304 (465)
Q Consensus 289 ~~F~~-g~~~vLV~Td~ 304 (465)
T Consensus 437 ~RL~NMGiapFNIASSV 453 (577)
T TIGR02538 437 ARLVNMGIAPFNIASSV 453 (577)
T ss_pred HHHHHCCCHHHHHHHHH
T ss_conf 99975384137999999