HHsearch alignment for GI: 254780382 and conserved domain: TIGR02562

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3, Yersinia-type; InterPro: IPR013395 The helicase encoded in many CRISPR-associated (cas) gene clusters is designated Cas3. The Yersinia-type helicase Cas3 proteins differ from the more common Cas3 proteins by being considerably larger, though they still share a number of motifs, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc..
Probab=98.96  E-value=4e-09  Score=77.74  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=68.3

Q ss_pred             EEEEECCCCCCCCCCCCCC----CCC-----CCCCCCCCCCCHHHHHHHHHH-------HCC------------------
Q ss_conf             6776213443222222222----233-----222223454203332344442-------013------------------
Q gi|254780382|r  248 GIIFCNQKKNVVNLCHSLE----KQG-----FSVCAIHGNIDQRSRMKILSN-------FKE------------------  293 (465)
Q Consensus       248 ~iIF~~t~~~~~~l~~~L~----~~g-----~~v~~lhg~l~~~~R~~~~~~-------F~~------------------  293 (465)
T Consensus       773 GLiR~ANI~~~~~LAq~Ly~~~~~~~fadyqiHlc~YHa~~~L~~Rsy~E~rLD~~L~Rh~~GkkrktGn~~l~q~~ei~  852 (1153)
T TIGR02562       773 GLIRVANIDPLIRLAQALYALLAEEKFADYQIHLCVYHAQDPLLLRSYIERRLDKLLTRHKPGKKRKTGNEQLFQDDEIE  852 (1153)
T ss_pred             EEEEHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHH
T ss_conf             61544036789999999874054005771366653031302899999999988775034577642333146531308899


Q ss_pred             ---------CCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEE--EE-EECHHHHHHH--HH
Q ss_conf             ---------5523888846646440788765002002467789988752102458885399--99-7788899999--99
Q gi|254780382|r  294 ---------GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKA--FT-LVAKEDIKHI--DA  359 (465)
Q Consensus       294 ---------g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~--i~-~~~~~d~~~~--~~  359 (465)
T Consensus       853 ~~l~~~~~~~~lFivlatpV~EVGRDHD-YdWAi-~d-pSSmrS~iQlAGRV~RHR~e~~~e~~N~~il~~N~r~~~~rd  929 (1153)
T TIGR02562       853 DLLQNSPAKNHLFIVLATPVEEVGRDHD-YDWAI-AD-PSSMRSIIQLAGRVRRHRLEKVQEQPNIVILQKNYRALERRD  929 (1153)
T ss_pred             HHHHCCCCCCCCEEEEECCCEECCCCCC-CCHHH-HC-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             8863160015864897167123067776-01445-23-245667877316430014675456623001045788887666


Q ss_pred             HHHHHCCCC
Q ss_conf             999962312
Q gi|254780382|r  360 IEKLIEKKV  368 (465)
Q Consensus       360 i~~~~~~~~  368 (465)
T Consensus       930 ~ekrkqqsk  938 (1153)
T TIGR02562       930 IEKRKQQSK  938 (1153)
T ss_pred             HHHHHHCCC
T ss_conf             677641057