HHsearch alignment for GI: 254780382 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=99.82 E-value=5.9e-20 Score=147.65 Aligned_cols=313 Identities=22% Similarity=0.292 Sum_probs=171.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCC-------C-CCCCCEEEEECCCHHHHHHHH
Q ss_conf 8798789899999999976997-999827985178999999999986065-------2-147827999828589999999
Q gi|254780382|r 19 AGYVKPTPIQIKTIPLVLQRHD-VCGIAQTGTGKTASFVLPMLTILEKGR-------A-RVRMPRTLILEPTRELAAQVA 89 (465)
Q Consensus 19 ~~~~~pt~iQ~~~i~~~l~g~d-vi~~apTGsGKT~~~~lp~l~~l~~~~-------~-~~~~~~~lil~PtreLa~Qi~ 89 (465)
T Consensus 12 ~G~~GPfpwQ~~L~~r~~~G~~P~~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~yvVdRR~vVD~~t 91 (975)
T TIGR02621 12 TGYSGPFPWQLRLAERFVAGEPPESCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVYVVDRRTVVDQST 91 (975)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCEEECCHH
T ss_conf 58988865899999998548988766787532368999999999987400036732421336831378871424534327
Q ss_pred HHHHHHCCCCC---------------------------CCCCCCCCCCCCCC----CCCCCCCHHHHHHCCCCHHHHHHH
Q ss_conf 99874102333---------------------------22100001222222----222221011221022102333320
Q gi|254780382|r 90 DNFEKYGKNYN---------------------------LTVALLIGGIPFEA----QNKKLERGADVLICTPGRILDHFN 138 (465)
Q Consensus 90 ~~~~~~~~~~~---------------------------l~~~~~~gg~~~~~----~~~~l~~~~~IiV~TP~rl~~~l~ 138 (465)
T Consensus 92 e~a~~i~~aL~~~pe~~Av~~vl~slr~~~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPavivgT----vDm~g 167 (975)
T TIGR02621 92 EEAEKIREALGEAPELPAVRYVLESLRSAFAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAVIVGT----VDMIG 167 (975)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEC----CCCHH
T ss_conf 89999998546888778999999973236787765665233111675530223233453178996699834----42023
Q ss_pred -----CCC-CCC----------CCCEEECCCCCCCCCCCCCHHHHHHHHHH-H-CCC---CCCCCCCCCCC----CCCCC
Q ss_conf -----000-001----------21001025510000000100357887543-1-022---22233343211----22221
Q gi|254780382|r 139 -----RGK-LLM----------NNIEILVIDEADRMLDMGFIPYIQNITSL-V-PFT---RQTLLFSATMT----DELQK 193 (465)
Q Consensus 139 -----~~~-~~l----------~~~~~lViDEah~l~~~gf~~~i~~i~~~-~-~~~---~q~i~~SAT~~----~~v~~ 193 (465)
T Consensus 168 SRLLFrGYg~spk~rpihAal~G~DAl~VlDEAH--l~~~f~e~L~~i~~E~~R~~d~~~~~V~~Ltatp~td~p~~~~~ 245 (975)
T TIGR02621 168 SRLLFRGYGCSPKSRPIHAALLGQDALIVLDEAH--LSPAFQETLKQIRSEQQRLEDFLPLRVVELTATPRTDTPDTLTL 245 (975)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCHHHCCCCEECCEEEECCCCCCCCCCC
T ss_conf 4354413456766551122213110665433430--58789999999851104701226862031366301478865422
Q ss_pred CCCCCCCCCC---------CCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHH----HCCCCCCCCCEEEEEECCCCC
Q ss_conf 1112222210---------0134443---21234642111112222110244432----101223456506776213443
Q gi|254780382|r 194 VSENFLQNPK---------RIEVNTP---SSTAETIEHCFVATYAQYSKKCALLQ----QLLQSQDTMKNGIIFCNQKKN 257 (465)
Q Consensus 194 l~~~~l~~~~---------~i~v~~~---~~~~~~i~~~~~~~~~~~~~k~~~l~----~l~~~~~~~~k~iIF~~t~~~ 257 (465)
T Consensus 246 l~~~d~~~~~~~~rL~~kk~~~L~p~~de~~~~~~v~~~~~~~~D--GkaaaalteqaWsrakels~g~~~~Vf~~~~~~ 323 (975)
T TIGR02621 246 LSAEDYKHPVLKKRLDAKKEVKLDPQSDEKRLSEDVKELDLKMKD--GKAAAALTEQAWSRAKELSSGEAILVFCNTVDE 323 (975)
T ss_pred CCCCCCCCCHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 355101031332043412021047826899988511355422003--056788777776665541278669998768430
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHH------HHHHHHHCC-----------CCCEEEEEHHHHHHHHCCCCCCEEEEE
Q ss_conf 222222222233222223454203332------344442013-----------552388884664644078876500200
Q gi|254780382|r 258 VVNLCHSLEKQGFSVCAIHGNIDQRSR------MKILSNFKE-----------GTIQLMVASDLAARGLDIPDVGHVFNF 320 (465)
Q Consensus 258 ~~~l~~~L~~~g~~v~~lhg~l~~~~R------~~~~~~F~~-----------g~~~vLV~Td~~~~GiDip~v~~VI~~ 320 (465)
T Consensus 324 v~~v~a~L~k~~~~~~~ltG~vr~~~~d~lar~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~EVGadld-fdhLvt- 401 (975)
T TIGR02621 324 VKKVVAKLPKEARRLEDLTGTVRGLERDMLARRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTGEVGADLD-FDHLVT- 401 (975)
T ss_pred HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCC-CCHHHH-
T ss_conf 689886457745407762881043347852001314531487645677366899877999732425503443-111221-
Q ss_pred CCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 2467789988752102458885
Q gi|254780382|r 321 DVPNRAENYIHRIGRTGRAGRH 342 (465)
Q Consensus 321 d~P~~~~~y~hR~GR~gR~g~~ 342 (465)
T Consensus 402 ~~-~~~~sl~QRfGRvnR~G~r 422 (975)
T TIGR02621 402 DL-APFESLVQRFGRVNRFGER 422 (975)
T ss_pred CC-CHHHHHHHHHHHHCCCCCC
T ss_conf 14-4245786543002000223