HHsearch alignment for GI: 254780382 and conserved domain: TIGR02768
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=94.62 E-value=0.058 Score=31.55 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 987898999999999769979-9982798517899999999998606521478279998285899999999987410233
Q gi|254780382|r 21 YVKPTPIQIKTIPLVLQRHDV-CGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99 (465)
Q Consensus 21 ~~~pt~iQ~~~i~~~l~g~dv-i~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~ 99 (465)
T Consensus 412 ~~rLs~EQ~~Av~hvt~s~~iavVvG~AGtGKSt--~L~aAR~-A---We~~Gy~-V~G---AALsGKAAegLe---~~s 478 (888)
T TIGR02768 412 HERLSEEQKEAVRHVTGSGDIAVVVGRAGTGKST--MLKAARE-A---WEAAGYR-VIG---AALSGKAAEGLE---AES 478 (888)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH--HHHHHHH-H---HHHCCCE-EEE---HHHHHHHHHHHH---CCC
T ss_conf 7774589999987532899648997489987667--8999999-9---9873977-871---545558988730---026
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 322100001222222222221011221022102333320000001210010255100000001003578875431
Q gi|254780382|r 100 NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 (465)
Q Consensus 100 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~ 174 (465)
T Consensus 479 GI~SR------------------------TLASle~aW~~G~d~L~~~dvLviDEAG-MV~--S-~Qm~r~l~~A 525 (888)
T TIGR02768 479 GIESR------------------------TLASLEYAWANGRDLLEDKDVLVIDEAG-MVG--S-RQMARVLKEA 525 (888)
T ss_pred CCCHH------------------------HHHHHHHHHHCCCCCCCCCCEEEEECCC-CHH--H-HHHHHHHHHH
T ss_conf 87504------------------------7887999987387522477668985154-414--6-7788999999