HHsearch alignment for GI: 254780382 and conserved domain: TIGR02785
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=97.45 E-value=0.00032 Score=46.09 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 8989999999997699799982798517899999999998606521478279998285899999999987
Q gi|254780382|r 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFE 93 (465)
Q Consensus 24 pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 93 (465)
T Consensus 2 wT~~Q~~AI~--~~G~nILVsAsAGSGKTaVLVERii~~i~~gE~pvdiDrLLVVTFTnaAA~EMK~Ri~ 69 (1295)
T TIGR02785 2 WTDEQWQAIY--DRGQNILVSASAGSGKTAVLVERIIKKILRGENPVDIDRLLVVTFTNAAAREMKERIE 69 (1295)
T ss_pred CCHHHHHHHH--HCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8788899996--3688647653226661478999999996478877020210367888999999999999