HHsearch alignment for GI: 254780382 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.11 E-value=0.0064 Score=37.73 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=34.0
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99769979998279851789999999999860652147827999828589999999998741023332210000122
Q gi|254780382|r 34 LVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGI 110 (465)
Q Consensus 34 ~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~ 110 (465)
T Consensus 154 Ai~~~knIii~GGTgSGKTT-f~kal~~~IP~~E------R~iTIED~~E~~~----------~hhpN~V~L~ysk~ 213 (328)
T TIGR02788 154 AIASRKNIIISGGTGSGKTT-FLKALVKEIPKDE------RLITIEDTRELFL----------PHHPNKVHLFYSKG 213 (328)
T ss_pred HHHCCCEEEEEECCCCHHHH-HHHHHHHCCCCCC------CEEEEEEEECCCC----------CCCCCEEEEEECCC
T ss_conf 98738919999068971899-9999973276225------2788852011478----------88986456553464