HHsearch alignment for GI: 254780382 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.73 E-value=0.2 Score=28.05 Aligned_cols=11 Identities=27% Similarity=0.178 Sum_probs=6.3
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999978798
Q gi|254780382|r 12 VVCAVLDAGYV 22 (465)
Q Consensus 12 l~~~l~~~~~~ 22 (465)
T Consensus 37 l~~~a~~~Gl~ 47 (694)
T TIGR03375 37 LPRAARRAGLS 47 (694)
T ss_pred HHHHHHHCCCE
T ss_conf 99999977996