HHsearch alignment for GI: 254780382 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=0 Score=373.22 Aligned_cols=202 Identities=50% Similarity=0.828 Sum_probs=193.4
Q ss_pred HHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH
Q ss_conf 43669888999999978798789899999999976997999827985178999999999986065214782799982858
Q gi|254780382|r 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82 (465)
Q Consensus 3 f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~Ptr 82 (465)
T Consensus 1 F~~l~L~~~ll~~l~~~g~~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~-~~~~~~alil~PTr 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTR 79 (203)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEEECCH
T ss_conf 98696599999999987999999999999999977998899757997222888869999986166-76896699996879
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 99999999987410233322100001222222222221011221022102333320000001210010255100000001
Q gi|254780382|r 83 ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG 162 (465)
Q Consensus 83 eLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~g 162 (465)
T Consensus 80 ELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~g 159 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCC
T ss_conf 99999999999850579838999838988799999985387599968189999998488651322489998588887477
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0035788754310222223334321122221111222221001
Q gi|254780382|r 163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI 205 (465)
Q Consensus 163 f~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 205 (465)
T Consensus 160 f~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l~~~~l~~Pv~I 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf 6999999998589677799998049988999999977995087