HHsearch alignment for GI: 254780382 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00  E-value=0  Score=373.22  Aligned_cols=202  Identities=50%  Similarity=0.828  Sum_probs=193.4

Q ss_pred             HHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH
Q ss_conf             43669888999999978798789899999999976997999827985178999999999986065214782799982858
Q gi|254780382|r    3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR   82 (465)
Q Consensus         3 f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~Ptr   82 (465)
T Consensus         1 F~~l~L~~~ll~~l~~~g~~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~-~~~~~~alil~PTr   79 (203)
T cd00268           1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTR   79 (203)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEEECCH
T ss_conf             98696599999999987999999999999999977998899757997222888869999986166-76896699996879


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             99999999987410233322100001222222222221011221022102333320000001210010255100000001
Q gi|254780382|r   83 ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG  162 (465)
Q Consensus        83 eLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~g  162 (465)
T Consensus        80 ELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~g  159 (203)
T cd00268          80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG  159 (203)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCC
T ss_conf             99999999999850579838999838988799999985387599968189999998488651322489998588887477


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0035788754310222223334321122221111222221001
Q gi|254780382|r  163 FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRI  205 (465)
Q Consensus       163 f~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i  205 (465)
T Consensus       160 f~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l~~~~l~~Pv~I  202 (203)
T cd00268         160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI  202 (203)
T ss_pred             CHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf             6999999998589677799998049988999999977995087