HHsearch alignment for GI: 254780382 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=97.02 E-value=0.0021 Score=40.85 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=37.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 7999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r 40 DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97 (465)
Q Consensus 40 dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~ 97 (465)
T Consensus 1 H~lvig~tGsGKt~~~vip~ll~--~------~~s~vv~D~Kgel~~~t~~~~~~~G~ 50 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT--W------PGSVVVLDPKGENFELTSEHRRALGR 50 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--C------CCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 97998899997318999999981--8------99889994878999999999998799