HHsearch alignment for GI: 254780382 and conserved domain: cd01126

>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=97.02  E-value=0.0021  Score=40.85  Aligned_cols=50  Identities=26%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf             7999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r   40 DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK   97 (465)
Q Consensus        40 dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~   97 (465)
T Consensus         1 H~lvig~tGsGKt~~~vip~ll~--~------~~s~vv~D~Kgel~~~t~~~~~~~G~   50 (384)
T cd01126           1 HVLVFAPTRSGKGVGFVIPNLLT--W------PGSVVVLDPKGENFELTSEHRRALGR   50 (384)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH--C------CCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             97998899997318999999981--8------99889994878999999999998799