HHsearch alignment for GI: 254780382 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.97 E-value=0.12 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=29.5
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99978798789899999999976997--999827985178999999999986
Q gi|254780382|r 15 AVLDAGYVKPTPIQIKTIPLVLQRHD--VCGIAQTGTGKTASFVLPMLTILE 64 (465)
Q Consensus 15 ~l~~~~~~~pt~iQ~~~i~~~l~g~d--vi~~apTGsGKT~~~~lp~l~~l~ 64 (465)
T Consensus 58 ~L~~LG~~---~~~~~~l~~~~~~~~GlilitGptGSGKtTtl-~a~l~~~~ 105 (264)
T cd01129 58 DLEKLGLK---PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHHCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 98795799---99999999997089988999789999779999-99998643