HHsearch alignment for GI: 254780382 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=90.25 E-value=1.1 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=14.6
Q ss_pred CCCCEEEECCCCCCHHH
Q ss_conf 69979998279851789
Q gi|254780382|r 37 QRHDVCGIAQTGTGKTA 53 (465)
Q Consensus 37 ~g~dvi~~apTGsGKT~ 53 (465)
T Consensus 27 ~G~~vaivG~sGsGKST 43 (237)
T cd03252 27 PGEVVGIVGRSGSGKST 43 (237)
T ss_pred CCCEEEEECCCCCHHHH
T ss_conf 99999999999985999