HHsearch alignment for GI: 254780382 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=97.15 E-value=0.0027 Score=40.10 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 898999999999769979998279851789999999999860652147827999828589999999998741
Q gi|254780382|r 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY 95 (465)
Q Consensus 24 pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~ 95 (465)
T Consensus 1 Ln~~Q~~av~~--~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~--p~~IL~lTFT~kAA~Em~~Ri~~~ 68 (494)
T pfam00580 1 LNPEQRKAVTH--LGGPLLVLAGAGTGKTRVLTERIAYLILEGGID--PEEILAVTFTNKAAREMKERILKL 68 (494)
T ss_pred CCHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC--HHHEEEEECHHHHHHHHHHHHHHH
T ss_conf 99889999809--999979997187068999999999999818999--747876702899999999999987