HHsearch alignment for GI: 254780382 and conserved domain: pfam02399
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=98.66 E-value=5.8e-08 Score=70.23 Aligned_cols=277 Identities=15% Similarity=0.224 Sum_probs=133.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99982798517899999999998606521478279998285899999999987410233322100001222222222221
Q gi|254780382|r 41 VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120 (465)
Q Consensus 41 vi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~ 120 (465)
T Consensus 52 ~VVRAPMGSGKTTAL-i~wL~~~L~~~----d~SvLVVSCRRSFT~tL~~Rf~~aGL-~gF-vtY~~s-~~yim~~~~f~ 123 (829)
T pfam02399 52 LVVRAPMGSGKTTAL-IEWLRAALDSP----DTSVLVVSCRRSFTQTLLDRFNDAGL-TGF-VTYLDS-TDYVMNGRPFR 123 (829)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHCCC----CCEEEEEECHHHHHHHHHHHHHHCCC-CCC-EEEEEC-CCEEECCCCCC
T ss_conf 899768888718999-99999973786----65499997016789999999986698-651-357504-43476787532
Q ss_pred CHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHH-------HHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 01122102210233332000000121001025510000000100357887-------54310222223334321122221
Q gi|254780382|r 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNI-------TSLVPFTRQTLLFSATMTDELQK 193 (465)
Q Consensus 121 ~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i-------~~~~~~~~q~i~~SAT~~~~v~~ 193 (465)
T Consensus 124 ---RLiV-QiESLHR-V--~~~ll~~YDvLILDEVMSti~QlySpTM~~L~~VDall~~LLr~CprIIAMDAT~NaqlVd 196 (829)
T pfam02399 124 ---RLIV-QIESLHR-V--DENLLNNYDVLILDEVMSTIGQLYSPTMRRLKEVDALLLRLLRNCPRIIAMDATVNAQLVD 196 (829)
T ss_pred ---EEEE-EEECCCC-C--CHHHCCCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf ---3688-8511113-8--8334256677985778888887606888999999999999985498279840204289999
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCC-------------CCCC----------C----------CCCCHHHHHHHHCC
Q ss_conf 111222221-001344432123464211-------------1112----------2----------22110244432101
Q gi|254780382|r 194 VSENFLQNP-KRIEVNTPSSTAETIEHC-------------FVAT----------Y----------AQYSKKCALLQQLL 239 (465)
Q Consensus 194 l~~~~l~~~-~~i~v~~~~~~~~~i~~~-------------~~~~----------~----------~~~~~k~~~l~~l~ 239 (465)
T Consensus 197 ~La~lRG~~nvhvIv~~yas~GFS~R~c~~l~~LG~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tFF~eL~ 276 (829)
T pfam02399 197 FLAGLRGEENVHVIVNTYASPGFSNRRCTFLRTLGTDVLASVLRDEDEGAESSATPPHSPSGEPSAAISLRGATFFGELE 276 (829)
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCEEEEHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99972688806899814526665666387564336488998728722122346788888766543335665565799999
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCC--EE
Q ss_conf 2234565067762134432222222222332222234542033323444420135523888846646440788765--00
Q gi|254780382|r 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG--HV 317 (465)
Q Consensus 240 ~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~--~V 317 (465)
T Consensus 277 ~rL~~G~NiCiFsSTvsFSe~vArFc~~ft~sVLvLnS~rp~~----DV~~W~--~yrVvIYTTVVTVGLSFD~~HFhSM 350 (829)
T pfam02399 277 ARLEAGKNVCLFSSTVSFSEIVARFCARFTDSVLLLNSTRPKC----DVNSWS--RYRVVIYTTVVTVGLSFDPSHFHSM 350 (829)
T ss_pred HHHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CCCCCC--CEEEEEEEEEEEEEECCCHHHHHHH
T ss_conf 9984798079994447699999999984589089970899985----502345--1579999988998502354665412
Q ss_pred EEECCCC----CHHHHHHHHHCCCC
Q ss_conf 2002467----78998875210245
Q gi|254780382|r 318 FNFDVPN----RAENYIHRIGRTGR 338 (465)
Q Consensus 318 I~~d~P~----~~~~y~hR~GR~gR 338 (465)
T Consensus 351 FAYVKPm~~GPDMvSVYQSlGRVR~ 375 (829)
T pfam02399 351 FAYVKPMKGGPDMVSVYQSLGRVRS 375 (829)
T ss_pred EEEECCCCCCCCEEHHHHHHHHHHH
T ss_conf 0133035689972013554005776