HHsearch alignment for GI: 254780382 and conserved domain: pfam03237
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=94.45 E-value=0.15 Score=28.94 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=48.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98279851789999999999860652147827999828589999999-99874102333221000012222222222210
Q gi|254780382|r 43 GIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVA-DNFEKYGKNYNLTVALLIGGIPFEAQNKKLER 121 (465)
Q Consensus 43 ~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~-~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~ 121 (465)
T Consensus 2 ~~ggr~~GKT~~~~~~~~~~a~~~~----~~~~~i~~~t~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~i~~~n 72 (380)
T pfam03237 2 ILGSRQSGKTFAFAREALRHALGNG----PKNQIILSASKAQARLEFKKGIIEIAGDL-LEIT-F---EEKNGNPIILPN 72 (380)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHHHHHHHHHHH-CCCC-E---EECCCCEEEECC
T ss_conf 4264525283999999999998589----97289997999999999999999966886-3871-6---727887399159
Q ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 1122102210233332000000121001025510000000
Q gi|254780382|r 122 GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDM 161 (465)
Q Consensus 122 ~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~ 161 (465)
T Consensus 73 Gs~i~~~~~~---~~~~~~~~rG~~~~~i~~DE~a~~~~~ 109 (380)
T pfam03237 73 GAKLYFLGLE---SETTAQGYRGASIAGIYFDEATWLPKF 109 (380)
T ss_pred CCEEEEEECC---CCCCHHHCCCCCCCEEEEEEHHHCCCH
T ss_conf 9889996257---766431034854554998304536627