HHsearch alignment for GI: 254780382 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.42 E-value=0.53 Score=25.32 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=21.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 69979998279851789999999999860652147827999828
Q gi|254780382|r 37 QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 (465)
Q Consensus 37 ~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P 80 (465)
T Consensus 18 ~G~l~vi~g~pg~GKS~-~~~~~a~~~a~----~~g~~Vl~~sl 56 (186)
T pfam03796 18 KGDLIIIAARPSMGKTA-FALNIARNAAL----KQDKPVLFFSL 56 (186)
T ss_pred CCCEEEEEECCCCCHHH-HHHHHHHHHHH----HCCCCEEEECC
T ss_conf 88179999679998799-99999999999----70996687547