HHsearch alignment for GI: 254780382 and conserved domain: pfam04851

>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.55  E-value=3.7e-14  Score=110.23  Aligned_cols=100  Identities=26%  Similarity=0.324  Sum_probs=73.9

Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             78989999999997699799982798517899999999998606521478279998285899999999987410233322
Q gi|254780382|r   23 KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT  102 (465)
Q Consensus        23 ~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~  102 (465)
T Consensus         3 ~LR~yQ~~a~~~~~~~~~~~i~~pTGsGKT~~~~~-~i~~~~~-----~~~~~lvlvp~~~L~~Q~~~~~----------   66 (103)
T pfam04851         3 ELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAAK-LIARLLK-----GKKKVLFLVPRKDLLEQALEEF----------   66 (103)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HHHHHHH-----CCCCEEEEECCHHHHHHHHHHH----------
T ss_conf             87299999999999639869995899987999999-9999984-----6992999908299999999965----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             10000122222222222101122102210233332000000121001025510000000100357887543102222233
Q gi|254780382|r  103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL  182 (465)
Q Consensus       103 ~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~i~  182 (465)
T Consensus        67 ----------------------------------------------lii~DE~H~~~a~~~---~~~l~~~~~~~-~~lG   96 (103)
T pfam04851        67 ----------------------------------------------VIIIDEAHHSSAKTK---YRKILEYFKPA-FLLG   96 (103)
T ss_pred             ----------------------------------------------HHHHHHHHHCCCHHH---HHHHHHHCCCC-EEEE
T ss_conf             ----------------------------------------------646016352353789---99999957726-0899


Q ss_pred             CCCCCC
Q ss_conf             343211
Q gi|254780382|r  183 FSATMT  188 (465)
Q Consensus       183 ~SAT~~  188 (465)
T Consensus        97 lTATP~  102 (103)
T pfam04851        97 LTATPE  102 (103)
T ss_pred             EEECCC
T ss_conf             800888