HHsearch alignment for GI: 254780382 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.55 E-value=3.7e-14 Score=110.23 Aligned_cols=100 Identities=26% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78989999999997699799982798517899999999998606521478279998285899999999987410233322
Q gi|254780382|r 23 KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102 (465)
Q Consensus 23 ~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~ 102 (465)
T Consensus 3 ~LR~yQ~~a~~~~~~~~~~~i~~pTGsGKT~~~~~-~i~~~~~-----~~~~~lvlvp~~~L~~Q~~~~~---------- 66 (103)
T pfam04851 3 ELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAAK-LIARLLK-----GKKKVLFLVPRKDLLEQALEEF---------- 66 (103)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HHHHHHH-----CCCCEEEEECCHHHHHHHHHHH----------
T ss_conf 87299999999999639869995899987999999-9999984-----6992999908299999999965----------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 10000122222222222101122102210233332000000121001025510000000100357887543102222233
Q gi|254780382|r 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 (465)
Q Consensus 103 ~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~i~ 182 (465)
T Consensus 67 ----------------------------------------------lii~DE~H~~~a~~~---~~~l~~~~~~~-~~lG 96 (103)
T pfam04851 67 ----------------------------------------------VIIIDEAHHSSAKTK---YRKILEYFKPA-FLLG 96 (103)
T ss_pred ----------------------------------------------HHHHHHHHHCCCHHH---HHHHHHHCCCC-EEEE
T ss_conf ----------------------------------------------646016352353789---99999957726-0899
Q ss_pred CCCCCC
Q ss_conf 343211
Q gi|254780382|r 183 FSATMT 188 (465)
Q Consensus 183 ~SAT~~ 188 (465)
T Consensus 97 lTATP~ 102 (103)
T pfam04851 97 LTATPE 102 (103)
T ss_pred EEECCC
T ss_conf 800888