HHsearch alignment for GI: 254780382 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=98.50 E-value=5.7e-07 Score=63.84 Aligned_cols=137 Identities=19% Similarity=0.236 Sum_probs=70.4
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997999827985178999999-9999860652147827999828589999999998741023332210000122222222
Q gi|254780382|r 38 RHDVCGIAQTGTGKTASFVLP-MLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN 116 (465)
Q Consensus 38 g~dvi~~apTGsGKT~~~~lp-~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 116 (465)
T Consensus 2 g~~t~ld~HPGaGKTr~v-LP~~v~~-----~i~~~lRtlVLaPTRVV~~Em~eAL~g~~--vr~~t~a~~~-~~~~--- 69 (146)
T pfam07652 2 GTLTVLDLHPGAGKTRKV-LPELVRE-----CIDRRLRTLVLAPTRVVLAEMEEALRGLP--IRYHTPAVSS-EHTG--- 69 (146)
T ss_pred CCEEEEECCCCCCCCCHH-HHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHHHCCCC--CEEECHHHHC-CCCC---
T ss_conf 832798538999970224-8999999-----99728618997727999999999975899--4675234313-6688---
Q ss_pred CCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2221011221022102333320000001210010255100000001---0035788754310222223334321122221
Q gi|254780382|r 117 KKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG---FIPYIQNITSLVPFTRQTLLFSATMTDELQK 193 (465)
Q Consensus 117 ~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~g---f~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~ 193 (465)
T Consensus 70 ~~i-----vdvmCHAT~t~r~l~-~~~~~ny~viIMDE~H~~-DP~SIAarG~~~~~~~-~-g~~a~i~mTATPPG~~~~ 140 (146)
T pfam07652 70 REI-----VDVMCHATFTQRLLS-PVRVPNYEVIIMDEAHFT-DPASIAARGYISTLVE-L-GEAAAIFMTATPPGTSDP 140 (146)
T ss_pred CCE-----EEEECHHHHHHHHHC-CCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHH-C-CCEEEEEEECCCCCCCCC
T ss_conf 841-----889715988889736-888564479998512238-9899998899998854-3-865799995689998998
Q ss_pred CC
Q ss_conf 11
Q gi|254780382|r 194 VS 195 (465)
Q Consensus 194 l~ 195 (465)
T Consensus 141 fp 142 (146)
T pfam07652 141 FP 142 (146)
T ss_pred CC
T ss_conf 98