BLAST/PSIBLAST alignment of GI: 254780382 and GI: 116252340 at iteration 1
>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase) [Rhizobium leguminosarum bv. viciae 3841] Length = 521
>gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase) [Rhizobium leguminosarum bv. viciae 3841] Length = 521
Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/440 (62%), Positives = 337/440 (76%), Gaps = 1/440 (0%)
Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
FADLGLS KV+ AV DAGY PTPIQ IP L+R D+CGIAQTGTGKTASFVLPML++
Sbjct: 10 FADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSL 69
Query: 63 LEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERG 122
LEKGRAR RMPRTLILEPTRELAAQVA+NFEKYGKN+ L VALLIGG+ FE Q++KLERG
Sbjct: 70 LEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERG 129
Query: 123 ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182
ADVLICTPGR+LDHF RGKLLM+ +EILVIDEADRMLDMGFIP I+ I ++PFTRQTL
Sbjct: 130 ADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLF 189
Query: 183 FSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQ 242
FSATM E+QK+++ FLQNP+RIEV P+S A T+ FVA++ + +K A+L++L+++Q
Sbjct: 190 FSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLRELVRAQ 249
Query: 243 DTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS 302
+KN IIFCN+KK+V +L SLE+ GFSV A+HG++DQRSR L +F++G +QL+VAS
Sbjct: 250 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309
Query: 303 DLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362
D+AARGLDIPDV HVFNFDVP +E+Y+HRIGRTGRAGR G AFTLV K D K +DAIEK
Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEK 369
Query: 363 LIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRR-KKNYSSQKSHIP 421
LI +KV+WL+GDL+SL PP E ++ + G DR ++N +
Sbjct: 370 LIGQKVEWLSGDLTSLPPPAEDSRDSERPRRNSRERGARDGAGRDRAPRENGDKDRGRGR 429
Query: 422 LKESEKISKLQQDIQENDAD 441
+ K DIQ+N D
Sbjct: 430 GNRAAASHKSDIDIQDNGVD 449