>gnl|CDD|161938 TIGR00580, mfd, transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. Length = 926

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENY- 329
            +   HG + +    +++  F +G  Q++V + +   G+DIP+     N  +  RA+ + 
Sbjct: 688 RIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA----NTIIIERADKFG 743

Query: 330 ---IHRI-GRTGRAGRHGKAFTLVAKEDIKHIDAIEKL 363
              ++++ GR GR+ +   A+ L   +     DA ++L
Sbjct: 744 LAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRL 781