RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0330
>gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helicase [RNA processing and modification]. Length = 476
Score = 310 bits (796), Expect = 4e-85
Identities = 147/392 (37%), Positives = 226/392 (57%), Gaps = 7/392 (1%)
Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
FADLG+ P+++ A + G+ KPT IQ + IP+ L DV G+A+TG+GKT +F LP+L
Sbjct: 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL 120
Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
L + ++ L+L PTRELA Q+A+ FE G L VA+L+GG+ Q +L
Sbjct: 121 QRLLQEP---KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS 177
Query: 121 RGADVLICTPGRILDHFNRGKLL-MNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
+ +L+ TPGR+ DH K + ++ LV+DEADR+LDM F + I ++P RQ
Sbjct: 178 KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQ 237
Query: 180 TLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239
T LFSATMT +++K+ L NP ++ V++ T + ++ ++ + K L+ L
Sbjct: 238 TFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVYLL- 295
Query: 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLM 299
++ + I+FCN L L GF +HG + Q R+ L+ FK G ++
Sbjct: 296 -NELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSIL 354
Query: 300 VASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDA 359
V +D+A+RGLDIP V V N+D+P +++YIHR+GRT RAGR GKA TLV + D++ +
Sbjct: 355 VCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQR 414
Query: 360 IEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN 391
IE + KK+ D + + E++ AQ
Sbjct: 415 IEHALGKKLPEYKVDKNEVMSLNERVAEAQKE 446