RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0335
>gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helicase [RNA processing and modification]. Length = 482
Score = 266 bits (682), Expect = 9e-72
Identities = 136/396 (34%), Positives = 214/396 (54%), Gaps = 25/396 (6%)
Query: 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLT 61
F + L + + +GY KPTP+Q +IP++ D+ AQTG+GKTA+F++P+++
Sbjct: 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIIS 134
Query: 62 ILEKGR-------ARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEA 114
L PR LIL PTREL Q+ + K+ + ++ GG A
Sbjct: 135 YLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA 194
Query: 115 QNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD-MGFIPYIQNI--- 170
Q + ++RG D+L+ TPGR+ D RGK+ ++N + LV+DEADRMLD MGF P I+ I
Sbjct: 195 QLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQ 254
Query: 171 -TSLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQY 228
RQTLLFSAT E+Q+++ +FL N + V ST+E I + +
Sbjct: 255 LGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN-EM 313
Query: 229 SKKCALLQQLLQSQDTMKNG-------IIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281
K+ LL L + +G ++F K+ L L G+ +IHG+ Q
Sbjct: 314 EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQ 373
Query: 282 RSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGR 341
R + L++F+ G ++VA+++AARGLDIP+V HV N+D+P ++Y+HRIGRTGR G
Sbjct: 374 IEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGN 433
Query: 342 HGKAFTLVAKEDIKHIDAIEKLIEK----KVDWLNG 373
G+A + +++ A+ +++ + WL+
Sbjct: 434 GGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469