RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0342
>gnl|CDD|35563 KOG0342, KOG0342, KOG0342, ATP-dependent RNA helicase pitchoune [RNA processing and modification]. Length = 543
Score = 251 bits (643), Expect = 3e-67
Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 8/389 (2%)
Query: 3 FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
F + LSP + A+ + G+ TP+Q KTIP +L+ DV A+TGTGKT +F+LP + +
Sbjct: 84 FEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIEL 143
Query: 63 LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
L K + + R LI+ PTRELA Q+ ++ K + ++TV ++IGG F + KL
Sbjct: 144 LRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLV 203
Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
+G ++LI TPGR+LDH N L N++ LV+DEADR+LD+GF ++ I ++P RQ
Sbjct: 204 KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQ 263
Query: 180 TLLFSATMTDELQKVSENFL-QNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
TLLFSAT +++ ++ L ++P + V T E +E +V A + +LL
Sbjct: 264 TLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVV--APSDSRFSLLY 321
Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
L+ I+F + +V L V IHG Q R F +
Sbjct: 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381
Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
++V +D+AARGLDIPDV V +D P+ E YIHR+GRT R G+ GKA L+A ++
Sbjct: 382 GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGF 441
Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
+ ++KL ++ ++ + LEK+
Sbjct: 442 LRYLKKLPLEEFEFPPLKPEDVQSQLEKL 470