RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0342

>gnl|CDD|35563 KOG0342, KOG0342, KOG0342, ATP-dependent RNA helicase pitchoune [RNA processing and modification]. Length = 543
 Score =  251 bits (643), Expect = 3e-67
 Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 8/389 (2%)

Query: 3   FADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTI 62
           F +  LSP  + A+ + G+   TP+Q KTIP +L+  DV   A+TGTGKT +F+LP + +
Sbjct: 84  FEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIEL 143

Query: 63  LEKGRARVRMP-RTLILEPTRELAAQVADNFEKYGK-NYNLTVALLIGGIPFEAQNKKLE 120
           L K + + R     LI+ PTRELA Q+    ++  K + ++TV ++IGG  F  +  KL 
Sbjct: 144 LRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLV 203

Query: 121 RGADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQ 179
           +G ++LI TPGR+LDH  N    L  N++ LV+DEADR+LD+GF   ++ I  ++P  RQ
Sbjct: 204 KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQ 263

Query: 180 TLLFSATMTDELQKVSENFL-QNPKRIEV--NTPSSTAETIEHCFVATYAQYSKKCALLQ 236
           TLLFSAT   +++ ++   L ++P  + V       T E +E  +V   A    + +LL 
Sbjct: 264 TLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVV--APSDSRFSLLY 321

Query: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296
             L+        I+F +   +V      L      V  IHG   Q  R      F +   
Sbjct: 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381

Query: 297 QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356
            ++V +D+AARGLDIPDV  V  +D P+  E YIHR+GRT R G+ GKA  L+A  ++  
Sbjct: 382 GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGF 441

Query: 357 IDAIEKLIEKKVDWLNGDLSSLNPPLEKI 385
           +  ++KL  ++ ++       +   LEK+
Sbjct: 442 LRYLKKLPLEEFEFPPLKPEDVQSQLEKL 470