RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0345
>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA processing and modification]. Length = 567
Score = 245 bits (627), Expect = 2e-65
Identities = 142/404 (35%), Positives = 216/404 (53%), Gaps = 34/404 (8%)
Query: 1 MDFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
F+ L LSP ++ A+ ++G+ K TP+Q TIPL+L+ DV A TG+GKT +F+LP
Sbjct: 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLP 63
Query: 59 MLTILEKGRARVRMPR--TLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFE 113
ML I+ + A+ + LI+ PTRELA Q VA F ++ N L LL+GG E
Sbjct: 64 MLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN--LNCELLVGGRSVE 121
Query: 114 AQNKKLER-GADVLICTPGRILDHFNRG--KLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
K + G ++L+ TPGR+LD R KL ++EILV+DEADR+LDMGF + I
Sbjct: 122 EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181
Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
S +P R+T LFSAT T E++ ++ L+NP R+ V S +A ++ A
Sbjct: 182 LSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATP------SSLALEYL 235
Query: 231 KCALLQQLLQ-----SQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRS 283
C ++L Q + + K I+F +V + + + +IHG + Q++
Sbjct: 236 VCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295
Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
R K+L F++ + ++ +D+AARGLDIP + V FD P +++HR GRT RAGR G
Sbjct: 296 RAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREG 355
Query: 344 KAFTLVAKE--------DIKHIDAIEKL-IEKKVDWLNGDLSSL 378
A + IK +E++ EK + D+ S+
Sbjct: 356 NAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQDIRSI 399