RPSBLAST alignment for GI: 254780382 and conserved domain: KOG0345

>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA processing and modification]. Length = 567
 Score =  245 bits (627), Expect = 2e-65
 Identities = 142/404 (35%), Positives = 216/404 (53%), Gaps = 34/404 (8%)

Query: 1   MDFADLG--LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLP 58
             F+ L   LSP ++ A+ ++G+ K TP+Q  TIPL+L+  DV   A TG+GKT +F+LP
Sbjct: 4   KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLP 63

Query: 59  MLTILEKGRARVRMPR--TLILEPTRELAAQ---VADNFEKYGKNYNLTVALLIGGIPFE 113
           ML I+ +  A+    +   LI+ PTRELA Q   VA  F ++  N  L   LL+GG   E
Sbjct: 64  MLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN--LNCELLVGGRSVE 121

Query: 114 AQNKKLER-GADVLICTPGRILDHFNRG--KLLMNNIEILVIDEADRMLDMGFIPYIQNI 170
              K  +  G ++L+ TPGR+LD   R   KL   ++EILV+DEADR+LDMGF   +  I
Sbjct: 122 EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181

Query: 171 TSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSK 230
            S +P  R+T LFSAT T E++ ++   L+NP R+ V   S +A        ++ A    
Sbjct: 182 LSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATP------SSLALEYL 235

Query: 231 KCALLQQLLQ-----SQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRS 283
            C   ++L Q     + +  K  I+F     +V        +  +   + +IHG + Q++
Sbjct: 236 VCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295

Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG 343
           R K+L  F++ +  ++  +D+AARGLDIP +  V  FD P    +++HR GRT RAGR G
Sbjct: 296 RAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREG 355

Query: 344 KAFTLVAKE--------DIKHIDAIEKL-IEKKVDWLNGDLSSL 378
            A   +            IK    +E++  EK    +  D+ S+
Sbjct: 356 NAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQDIRSI 399