BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase
protein [Candidatus Liberibacter asiaticus str. psy62]
(465 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/465 (100%), Positives = 465/465 (100%)
Query: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML
Sbjct: 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPML 60
Query: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE
Sbjct: 61 TILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE 120
Query: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT
Sbjct: 121 RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180
Query: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ
Sbjct: 181 LLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240
Query: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV
Sbjct: 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300
Query: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI
Sbjct: 301 ASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360
Query: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI
Sbjct: 361 EKLIEKKVDWLNGDLSSLNPPLEKIDIAQHNHARKNNPIPQKSTGFDRRKKNYSSQKSHI 420
Query: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL
Sbjct: 421 PLKESEKISKLQQDIQENDADSLGFRGNMPAFMLPKNRGKLNDKL 465
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 192 bits (488), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 188/344 (54%), Gaps = 7/344 (2%)
Query: 10 PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
P+V+ L + GYV T +Q + L+ DV AQTG+GKT +F L + + L
Sbjct: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
Query: 69 R---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
R P L + PTRELA QV E + VA+ IGG+ + + L+ GA +
Sbjct: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
Query: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
++ TPGR+ DH L +++++ +V+DEAD MLD+GF I+ I P R+ L+FSA
Sbjct: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
Query: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
T++ + +++N+ ++ R+ + + + I+ + A S + + +L+
Sbjct: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHGA- 244
Query: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
KN I+FC+ + +V L + F V A+ G + Q+ R L ++G ++ +A+D+A
Sbjct: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
Query: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
ARG+D+PD+ V + ++ + EN +HR GRTGRAGR G + ++
Sbjct: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 137/308 (44%), Gaps = 38/308 (12%)
Query: 47 TGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALL 106
G+GKT ++ M +E G + +I+ P LA Q + +KY +N + V ++
Sbjct: 302 VGSGKTLVALIAMAAAVEAG------GQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEII 355
Query: 107 IGGIPFEAQNKKLER----GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR----- 157
G +P + K LER A ++I T D KL++ +++DE R
Sbjct: 356 TGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL-----VIVDEQHRFGVQQ 410
Query: 158 ---MLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRIEVNTPSST 213
+ P++ +T+ P R TL+ ++ ++ K++E + P + + +
Sbjct: 411 RLKLTQKATAPHVLLMTA-TPIPR-TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRI 468
Query: 214 AETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL-EKQGFSV 272
E IE V ++ K + Q+ + +++ ++VV +SL E S+
Sbjct: 469 DEVIERLKV-VLSEGKKAYWICPQIEEKKES---------NFRSVVERFNSLHEHFTSSI 518
Query: 273 CAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHR 332
IHG + + ++ +FK GT +L++A+ + G+D+ D + + + +H+
Sbjct: 519 AIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQ 578
Query: 333 I-GRTGRA 339
+ GR GR
Sbjct: 579 LRGRVGRG 586
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 255 KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314
K+ +L L ++ V +H + R++I+ + + G ++V +L GLDIP+
Sbjct: 592 KRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPEC 651
Query: 315 GHVFNFDVPNRA--ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVD 369
G V D + I GRA R+ V + I + D I K I+ +D
Sbjct: 652 GLVAILDADKEGFLRSKTSLIQTIGRAARN------VNSKVILYADTITKSIQLAID 702
>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 220
Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 26 PIQIKTIPLVLQRHDVCGI-AQTGTGKTASFVLPMLTILEKGRARVRMPR-TLILEPTRE 83
P QI + +L HD C + A G+GKT S + + TI ++ PR LI+ P R
Sbjct: 7 PHQIVMVNWLLS-HDRCALWASMGSGKTVSVLFALSTI------KILDPRPVLIIAPLRV 59
Query: 84 LAAQVADNFEKYGKNYNLTVALLIG 108
D E++ ++TV+ LIG
Sbjct: 60 AQYVWKDEVERWSAFSDMTVSSLIG 84
>gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 296
Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226
S +TD L + N L+ + + S TIEH A YA
Sbjct: 50 SGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYA 92
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 27.7 bits (60), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF--NFDVPNRAENY 329
+ HG + ++ ++ F EG +++++ + GLD+P + D+ A+ Y
Sbjct: 863 IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY 922
Query: 330 IHRIGRTGRA 339
R GR GR+
Sbjct: 923 QLR-GRVGRS 931
>gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 378
Score = 27.3 bits (59), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 338 RAGRHGKAFTLVAK---EDIKHIDAIEKL 363
RAGRHG AFT K + +HID + L
Sbjct: 273 RAGRHGLAFTRFGKINLRNARHIDDMRPL 301
>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 292
Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 445 FRGNMPAFMLPKNRGKLNDK 464
FRG++PA + P +G L D+
Sbjct: 2 FRGSIPALITPFTKGNLIDE 21
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 190 ELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
E+Q++SE F+ N + + P TI H Q + QQ++Q+ T+KN
Sbjct: 27 EMQRLSEIFIVHNTVYLSITVP----HTIAH-------QLQSLRSNAQQIIQNIPTVKNA 75
Query: 249 IIFCNQKKN 257
++ + KN
Sbjct: 76 VVTLTENKN 84
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 316 HVFNFDVPNRAENYIH 331
+ NFDVP R N IH
Sbjct: 120 NAINFDVPERVRNKIH 135
>gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
G+ K + V +ED + I I + N DLS LNP ++I I
Sbjct: 179 GQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMIC 227
>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
PTP + P ++ CGI GT T +++GR + +I ++
Sbjct: 198 PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGC--------IKRGRIKAGSDVEIIGMGGKK 249
Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADVLICTPGRILDH 136
L + D E + K + +A G+ N+ + RG ++C PG I ++
Sbjct: 250 LKVKCTD-VEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR--VVCAPGSIQEY 300
>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 24 PTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRE 83
PTP + P ++ CGI GT T +++GR + +I ++
Sbjct: 198 PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGC--------IKRGRIKAGSDVEIIGMGGKK 249
Query: 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK-LERGADVLICTPGRILDH 136
L + D E + K + +A G+ N+ + RG ++C PG I ++
Sbjct: 250 LKVKCTD-VEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR--VVCAPGSIQEY 300
>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 385
Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 284 RMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315
R+ I+S+ + ++L ++SD +D PD+G
Sbjct: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 23.5 bits (49), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 190 ELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
E+Q++SE F+ N + + P TI H Q + A QQ++Q+ T+KN
Sbjct: 27 EMQRLSEIFIVHNTVYLSITVP----HTIAHQL-----QSLRSNA--QQIIQNIPTVKNA 75
Query: 249 IIFCNQKKN 257
++ + KN
Sbjct: 76 VVTLTENKN 84
>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 23.5 bits (49), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 190 ELQKVSENFL-QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNG 248
E+Q++SE F+ N + + P TI H Q + A QQ++Q+ T+KN
Sbjct: 27 EMQRLSEIFIVHNTVYLSITVP----HTIAHQL-----QSLRSNA--QQIIQNIPTVKNA 75
Query: 249 IIFCNQKKN 257
++ + KN
Sbjct: 76 VVTLTENKN 84
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,189
Number of Sequences: 1233
Number of extensions: 13098
Number of successful extensions: 57
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 23
length of query: 465
length of database: 328,796
effective HSP length: 77
effective length of query: 388
effective length of database: 233,855
effective search space: 90735740
effective search space used: 90735740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)