HHsearch alignment for GI: 254780383 and conserved domain: PRK10308
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional.
Probab=99.42 E-value=1.4e-11 Score=98.64 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCCCHHHCCCCHH
Q ss_conf 99999999999976799987777868999999999633320356799899873-------------17620001012689
Q gi|254780383|r 23 KELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFE-------------IADTPQKMLAIGEK 89 (227)
Q Consensus 23 ~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~-------------~ypt~e~l~~a~~~ 89 (227)
T Consensus 89 ~~I~~~L~pl~~~~PGlRvPg~~-d~fE~~vrAIlGQQvSv~aA~tl~~Rlv~~~G~~~~~~~~~~~FPtp~~la~~~~~ 167 (283)
T PRK10308 89 QIVAGALGKLGAARPGLRLPGSV-DAFEQGVRAILGQLVSVAMAAKLTAKVAQLYGERLDDFPDYVCFPTPQRLAAADPQ 167 (283)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCHH
T ss_conf 99999876776318997788879-88999999997140219999999999999948957889885347998998538975
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHH
Q ss_conf 99999997300379999997523554442-00----10000145677764323588889999875421-00012104678
Q gi|254780383|r 90 KLQNYIRTIGIYRKKSENIISLSHILINE-FD----NKIPQTLEGLTRLPGIGRKGANVILSMAFGIP-TIGVDTHIFRI 163 (227)
Q Consensus 90 el~~~ir~~G~~~~KAk~I~~~a~~i~~~-~~----g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p-~~~VDthv~Rv 163 (227)
T Consensus 168 ~----L~~lg~p~~ra~tl~~lA~a~~~g~l~l~~~~d~~~~~~~L~~l~GIGpWTa~Yv~mR~lg~pD~fp~~Dl~l~- 242 (283)
T PRK10308 168 A----LKALGMPLKRAEALIHLANAALEGTLPLTAPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK- 242 (283)
T ss_pred H----HHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH-
T ss_conf 6----64558966899999999999966986677789999999998736797889999999983789987876029999-
Q ss_pred HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 776565407888999999962188422678999
Q gi|254780383|r 164 SNRIGLAPGKTPNKVEQSLLRIIPPKHQYNAHY 196 (227)
Q Consensus 164 ~~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~~ 196 (227)
T Consensus 243 -~~l~---~~~~~~~~~~a~~W~PWRsYA~~~L 271 (283)
T PRK10308 243 -QRFP---GMTPAQIRRYAERWKPWRSYALLHI 271 (283)
T ss_pred -HHHC---CCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf -7613---5999999999753588999999999