HHsearch alignment for GI: 254780383 and conserved domain: TIGR00426
>TIGR00426 TIGR00426 competence protein ComEA helix-hairpin-helix repeat region; InterPro: IPR004509 This domain is found in competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This domain represents a region of two tandem copies of a helix-hairpin-helix domain, each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to this domain..
Probab=93.55 E-value=0.053 Score=34.17 Aligned_cols=55 Identities=27% Similarity=0.451 Sum_probs=43.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101268999999997300379999997523554442001000014567776432358888999
Q gi|254780383|r 83 MLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVIL 145 (227)
Q Consensus 83 l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il 145 (227)
T Consensus 11 INtAtaeElq~~~~GvG~--kKAeAIv~Y----REe~G-~F-~t~Edl~~V~GiG~~~~Ek~~ 65 (70)
T TIGR00426 11 INTATAEELQKALSGVGA--KKAEAIVAY----REEYG-RF-KTVEDLKKVSGIGEKLLEKNK 65 (70)
T ss_pred CCHHCHHHHHHHHCCCCH--HHHHHHHHH----HHCCC-CC-CCHHHHHHCCCCCHHHHHHHH
T ss_conf 011047888876428872--378999887----53277-95-762223214787624555564