HHsearch alignment for GI: 254780383 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=94.96 E-value=0.04 Score=34.95 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5677764323588889999875421000
Q gi|254780383|r 128 EGLTRLPGIGRKGANVILSMAFGIPTIG 155 (227)
Q Consensus 128 ~~L~~LpGVG~ktA~~il~~~~~~p~~~ 155 (227)
T Consensus 564 s~L~~~~g~G~~vA~~~~~~-F~~~~~~ 590 (706)
T TIGR00575 564 SELLSVEGVGPKVAESIVNF-FHDPNNL 590 (706)
T ss_pred HHHHHCCCCHHHHHHHHHHH-HHCCCCC
T ss_conf 55641014027899999998-7120001