HHsearch alignment for GI: 254780383 and conserved domain: TIGR01084

>TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760 The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions. Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate. This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=100.00  E-value=0  Score=346.70  Aligned_cols=198  Identities=23%  Similarity=0.359  Sum_probs=176.0

Q ss_pred             HHHHHHHCCCCCC-CCCC---------------CCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHCCCCCHHHCCCCHHHH
Q ss_conf             9999997679998-7777---------------86899999999963332035679-98998731762000101268999
Q gi|254780383|r   29 FYLFSLKWPSPKG-ELYY---------------VNHFTLIVAVLLSAQSTDVNVNK-ATKHLFEIADTPQKMLAIGEKKL   91 (227)
Q Consensus        29 ~~~L~~~yp~~~~-~l~~---------------~~p~~~LVa~iLs~qT~d~~v~~-~~~~L~~~ypt~e~l~~a~~~el   91 (227)
T Consensus         3 ~~~ll~Wy~~~gRk~LPWr~~~~~~cdeslkhi~~pY~VW~SEvMLQQTqV~tV~prYf~rFle~FPTv~~LA~A~~deV   82 (297)
T TIGR01084         3 REDLLSWYDKEGRKTLPWRQNKNQRCDESLKHIDDPYRVWVSEVMLQQTQVATVIPRYFERFLERFPTVQALANAPQDEV   82 (297)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHCCCHHHHHCCCHHHH
T ss_conf             78899999871786788747875542457752235451440021100110011267100476642788578747796579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             99999730037999999752355444200100001456777643235888899998754210001210467877656540
Q gi|254780383|r   92 QNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAP  171 (227)
Q Consensus        92 ~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~  171 (227)
T Consensus        83 L~lW~GLGYY-aRARNL~kAA~~v~~~fGG~fP~d~~~~~~L~GVG~yTAgAils~a~~~~~p~~DGNV~RVLsR~fA~~  161 (297)
T TIGR01084        83 LKLWEGLGYY-ARARNLHKAAQEVVEEFGGEFPQDLEDLKALPGVGRYTAGAILSFAYNKPVPILDGNVKRVLSRLFAVE  161 (297)
T ss_pred             HHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             9986257867-888999999999998718817723797851789762179999998726876201540788999998624


Q ss_pred             C-CCHHHH----HHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             7-888999----999962188-4226789999999966516489989472840331768519
Q gi|254780383|r  172 G-KTPNKV----EQSLLRIIP-PKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       172 ~-~~~~~~----~~~l~~~~p-~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
T Consensus       162 ~~~~~k~~e~~l~~~~~~llpe~~~~~~~nqalmDlGA~iC~rk~P~C~~CPl~~~C~A~~~  223 (297)
T TIGR01084       162 GWPGKKKVENRLWELAESLLPEKADPEAFNQALMDLGALICTRKKPKCDLCPLQDFCLAYKQ  223 (297)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             89887348899999999858865686588889986236103784785454870665556542