HHsearch alignment for GI: 254780383 and conserved domain: TIGR01084
>TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760 The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions. Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate. This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=100.00 E-value=0 Score=346.70 Aligned_cols=198 Identities=23% Similarity=0.359 Sum_probs=176.0
Q ss_pred HHHHHHHCCCCCC-CCCC---------------CCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHCCCCCHHHCCCCHHHH
Q ss_conf 9999997679998-7777---------------86899999999963332035679-98998731762000101268999
Q gi|254780383|r 29 FYLFSLKWPSPKG-ELYY---------------VNHFTLIVAVLLSAQSTDVNVNK-ATKHLFEIADTPQKMLAIGEKKL 91 (227)
Q Consensus 29 ~~~L~~~yp~~~~-~l~~---------------~~p~~~LVa~iLs~qT~d~~v~~-~~~~L~~~ypt~e~l~~a~~~el 91 (227)
T Consensus 3 ~~~ll~Wy~~~gRk~LPWr~~~~~~cdeslkhi~~pY~VW~SEvMLQQTqV~tV~prYf~rFle~FPTv~~LA~A~~deV 82 (297)
T TIGR01084 3 REDLLSWYDKEGRKTLPWRQNKNQRCDESLKHIDDPYRVWVSEVMLQQTQVATVIPRYFERFLERFPTVQALANAPQDEV 82 (297)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHCCCHHHHHCCCHHHH
T ss_conf 78899999871786788747875542457752235451440021100110011267100476642788578747796579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99999730037999999752355444200100001456777643235888899998754210001210467877656540
Q gi|254780383|r 92 QNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAP 171 (227)
Q Consensus 92 ~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~ 171 (227)
T Consensus 83 L~lW~GLGYY-aRARNL~kAA~~v~~~fGG~fP~d~~~~~~L~GVG~yTAgAils~a~~~~~p~~DGNV~RVLsR~fA~~ 161 (297)
T TIGR01084 83 LKLWEGLGYY-ARARNLHKAAQEVVEEFGGEFPQDLEDLKALPGVGRYTAGAILSFAYNKPVPILDGNVKRVLSRLFAVE 161 (297)
T ss_pred HHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9986257867-888999999999998718817723797851789762179999998726876201540788999998624
Q ss_pred C-CCHHHH----HHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf 7-888999----999962188-4226789999999966516489989472840331768519
Q gi|254780383|r 172 G-KTPNKV----EQSLLRIIP-PKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227 (227)
Q Consensus 172 ~-~~~~~~----~~~l~~~~p-~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~ 227 (227)
T Consensus 162 ~~~~~k~~e~~l~~~~~~llpe~~~~~~~nqalmDlGA~iC~rk~P~C~~CPl~~~C~A~~~ 223 (297)
T TIGR01084 162 GWPGKKKVENRLWELAESLLPEKADPEAFNQALMDLGALICTRKKPKCDLCPLQDFCLAYKQ 223 (297)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 89887348899999999858865686588889986236103784785454870665556542