HHsearch alignment for GI: 254780383 and conserved domain: TIGR03252
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=98.03 E-value=2.4e-05 Score=56.69 Aligned_cols=106 Identities=16% Similarity=0.300 Sum_probs=83.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 777786899999999963332035679989987317--620001012689999999973----00379999997523554
Q gi|254780383|r 42 ELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIA--DTPQKMLAIGEKKLQNYIRTI----GIYRKKSENIISLSHIL 115 (227)
Q Consensus 42 ~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~y--pt~e~l~~a~~~el~~~ir~~----G~~~~KAk~I~~~a~~i 115 (227)
T Consensus 12 ~LL~~~p~AlLiGMLLDQQvPmE~AF~GP~~l~~RlG~lD~~~IA~~Dpd~f~~l~~e~PAiHRfP~SMA~Riq~l~~~i 91 (177)
T TIGR03252 12 ELLSSDPFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYV 91 (177)
T ss_pred HHHCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 88713928999999982334299986185999988379998999817999999997679614217288999999999999
Q ss_pred HHHHCCCCHH-------H----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4420010000-------1----456777643235888899998
Q gi|254780383|r 116 INEFDNKIPQ-------T----LEGLTRLPGIGRKGANVILSM 147 (227)
Q Consensus 116 ~~~~~g~vP~-------~----~~~L~~LpGVG~ktA~~il~~ 147 (227)
T Consensus 92 v~~YdGda~~vW~~g~~dg~ell~Rl~~LPGFG~qKA~IFlAL 134 (177)
T TIGR03252 92 VDTYDGDATAVWTEGDPDGKELLRRLKALPGFGKQKAKIFLAL 134 (177)
T ss_pred HHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9980894988740679989999999986799619999999999