Query         gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs    149 out of 3690
Neff          6.6 
Searched_HMMs 33803
Date          Wed Jun  1 12:45:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780383.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1kg2_A A/G-specific adenine g  99.9 5.3E-28 1.6E-32  208.8   7.8  108  117-227    15-127 (139)
  2 >2abk_A Endonuclease III; DNA-  99.9   2E-25 5.8E-30  191.5   9.0  111   42-152     1-111 (111)
  3 >1orn_A Endonuclease III; DNA   99.9 2.3E-25 6.7E-30  191.1   9.1  110   43-152     1-110 (110)
  4 >1kea_A Possible G-T mismatche  99.9 3.1E-24 9.2E-29  183.4   8.5  109   43-151     2-110 (111)
  5 >3fsp_A A/G-specific adenine g  99.9 1.4E-23   4E-28  179.1   7.9  109   44-153     2-110 (110)
  6 >1pu6_A 3-methyladenine DNA gl  99.9 1.4E-23 4.1E-28  179.0   7.7  110   43-152     3-123 (123)
  7 >1ngn_A Methyl-CPG binding pro  99.9 3.5E-24   1E-28  183.1   2.5  115   31-153    15-129 (129)
  8 >1kg2_A A/G-specific adenine g  99.9 3.9E-22 1.2E-26  169.3   7.3   86   42-128     1-86  (86)
  9 >1m3q_A 8-oxoguanine DNA glyco  99.8   1E-21 3.1E-26  166.4   5.8  110   43-152     2-132 (133)
 10 >1mpg_A ALKA, 3-methyladenine   99.8 2.2E-21 6.5E-26  164.3   6.6  111   42-152     3-127 (127)
 11 >1orn_A Endonuclease III; DNA   99.8 3.7E-20 1.1E-24  156.0   6.7   77  151-227    26-103 (116)
 12 >2abk_A Endonuclease III; DNA-  99.8 4.3E-20 1.3E-24  155.6   5.8   76  152-227    22-97  (100)
 13 >2h56_A DNA-3-methyladenine gl  99.8 1.5E-19 4.3E-24  152.0   4.9  112  104-216    32-156 (156)
 14 >1kea_A Possible G-T mismatche  99.8 1.1E-18 3.3E-23  146.0   6.5   86  142-227    14-107 (110)
 15 >3fhf_A Mjogg, N-glycosylase/D  99.8 1.3E-18 3.8E-23  145.6   6.8  101   43-149     2-109 (113)
 16 >3fsp_A A/G-specific adenine g  99.7 2.8E-17 8.4E-22  136.6   6.4   74  150-223    30-108 (108)
 17 >2h56_A DNA-3-methyladenine gl  99.6 7.1E-16 2.1E-20  127.1   4.6   77   47-126     1-77  (77)
 18 >1pu6_A 3-methyladenine DNA gl  98.3 4.4E-07 1.3E-11   67.9   3.4   59  150-209    19-94  (95)
 19 >3i0w_A 8-oxoguanine-DNA-glyco  97.6 1.9E-05 5.7E-10   56.9   1.7   29  125-153    30-58  (58)
 20 >3fhg_A Mjogg, N-glycosylase/D  96.7  0.0094 2.8E-07   38.8   7.9   63   47-115     4-68  (73)
 21 >2jhn_A ALKA, 3-methyladenine   96.4  0.0033 9.7E-08   41.9   3.8   39   76-118    96-134 (134)
 22 >3i0w_A 8-oxoguanine-DNA-glyco  96.1  0.0076 2.2E-07   39.4   4.5   57  146-203    23-80  (84)
 23 >2jhn_A ALKA, 3-methyladenine   96.0  0.0042 1.2E-07   41.1   2.6   26  126-151    29-54  (55)
 24 >3i0w_A 8-oxoguanine-DNA-glyco  94.5   0.028 8.2E-07   35.6   3.0   39   74-117    28-66  (68)
 25 >1ixr_A Holliday junction DNA   93.2   0.033 9.8E-07   35.1   1.3   69   80-151    59-130 (191)
 26 >2bcq_A DNA polymerase lambda;  93.1    0.18 5.3E-06   30.2   4.9   60   87-149    19-78  (128)
 27 >1cuk_A RUVA protein; DNA repa  92.8    0.21 6.2E-06   29.7   5.0   54   95-151    11-66  (79)
 28 >2fmp_A DNA polymerase beta; n  92.7    0.21 6.3E-06   29.6   4.9   42  105-148    36-77  (119)
 29 >2ztd_A Holliday junction ATP-  92.3    0.19 5.6E-06   30.0   4.2   26  125-150    41-66  (75)
 30 >2w9m_A Polymerase X; SAXS, DN  92.3    0.04 1.2E-06   34.6   0.7   43  102-144    67-113 (118)
 31 >1ixr_A Holliday junction DNA   92.0    0.23 6.7E-06   29.4   4.3   75  127-202    71-157 (191)
 32 >1vdd_A Recombination protein   91.9   0.078 2.3E-06   32.6   1.8   28  125-152     9-36  (66)
 33 >1jms_A Terminal deoxynucleoti  91.8     0.3 8.9E-06   28.6   4.8   44  104-149    58-101 (154)
 34 >2ihm_A POL MU, DNA polymerase  91.4    0.28 8.4E-06   28.8   4.3   18  126-143   100-117 (129)
 35 >2kp7_A Crossover junction end  91.3    0.25 7.4E-06   29.2   3.9   58   87-148    21-78  (87)
 36 >3c1y_A DNA integrity scanning  91.2    0.14 4.1E-06   30.9   2.5   57   85-150     7-66  (74)
 37 >1m3q_A 8-oxoguanine DNA glyco  91.1     0.3 8.8E-06   28.7   4.1   20  148-167    23-42  (89)
 38 >2jhn_A ALKA, 3-methyladenine   90.3    0.73 2.2E-05   26.0   5.6   52  153-205     1-54  (61)
 39 >2w9m_A Polymerase X; SAXS, DN  89.7     0.2   6E-06   29.8   2.2   44  105-149    34-78  (118)
 40 >2ofk_A 3-methyladenine DNA gl  89.4     1.4 4.1E-05   24.1   6.4   74   48-121    31-111 (183)
 41 >1z00_A DNA excision repair pr  89.2    0.26 7.8E-06   29.0   2.6   36  113-148    33-71  (89)
 42 >2ztd_A Holliday junction ATP-  88.9    0.21 6.2E-06   29.7   1.9   61  126-187     7-69  (75)
 43 >1cuk_A RUVA protein; DNA repa  88.4    0.21 6.3E-06   29.7   1.6   61  126-187     6-68  (79)
 44 >1pzn_A RAD51, DNA repair and   88.4    0.76 2.3E-05   25.9   4.4   27  124-150    64-90  (95)
 45 >1pzn_A RAD51, DNA repair and   88.3    0.49 1.5E-05   27.2   3.5   43   70-115    48-91  (95)
 46 >1kft_A UVRC, excinuclease ABC  88.1    0.23 6.7E-06   29.5   1.6   36  113-148    38-76  (78)
 47 >2jg6_A DNA-3-methyladenine gl  87.5     1.4 4.2E-05   24.1   5.4   74   48-121    31-111 (121)
 48 >2edu_A Kinesin-like protein K  86.6     1.1 3.2E-05   24.9   4.4   58   82-148    33-90  (98)
 49 >3bzc_A TEX; helix-turn-helix,  86.2    0.52 1.5E-05   27.0   2.6   56   84-148     5-60  (70)
 50 >3bzc_A TEX; helix-turn-helix,  85.2    0.43 1.3E-05   27.6   1.8   24  125-148     7-30  (70)
 51 >1s5l_U Photosystem II 12 kDa   84.6    0.45 1.3E-05   27.5   1.6   22  126-147    14-35  (87)
 52 >2duy_A Competence protein com  83.8    0.42 1.3E-05   27.6   1.2   22  126-147    25-46  (75)
 53 >2a1j_A DNA repair endonucleas  83.5     1.8 5.2E-05   23.5   4.3   42   68-113    15-56  (63)
 54 >1b22_A DNA repair protein RAD  83.2       1 3.1E-05   25.0   3.0   36   77-115    46-81  (114)
 55 >2bgw_A XPF endonuclease; hydr  81.9    0.57 1.7E-05   26.8   1.3   23  127-150    13-35  (49)
 56 >1wcn_A Transcription elongati  80.8     1.6 4.6E-05   23.8   3.2   43   70-115    20-63  (70)
 57 >3bz1_U Photosystem II 12 kDa   80.4    0.85 2.5E-05   25.6   1.7   61   76-149    20-80  (104)
 58 >2nrt_A Uvrabc system protein   79.1     2.4   7E-05   22.6   3.7   24   71-94     26-49  (64)
 59 >1kft_A UVRC, excinuclease ABC  78.7    0.81 2.4E-05   25.8   1.2   38   71-111    38-75  (78)
 60 >1z00_B DNA repair endonucleas  77.0     3.4  0.0001   21.5   4.0   20  127-146    17-36  (71)
 61 >2csb_A Topoisomerase V, TOP61  76.9     2.9 8.6E-05   22.0   3.6   90   79-188    47-137 (142)
 62 >3c65_A Uvrabc system protein   76.1    0.62 1.8E-05   26.5   0.0   23  127-150   172-194 (226)
 63 >1x2i_A HEF helicase/nuclease;  73.5     1.3 3.8E-05   24.4   1.1   23  127-150    13-35  (49)
 64 >1a76_A Flap endonuclease-1 pr  70.5     1.7 5.2E-05   23.5   1.2   18  130-147    18-35  (65)
 65 >1dgs_A DNA ligase; AMP comple  68.8     3.2 9.5E-05   21.7   2.2   71   69-147    27-100 (116)
 66 >1exn_A 5'-exonuclease, 5'-nuc  64.9     2.3   7E-05   22.6   0.9   21  127-147    21-41  (80)
 67 >2izo_A FEN1, flap structure-s  60.5     3.2 9.5E-05   21.7   1.0   18  130-147    18-35  (82)
 68 >2zbk_B Type 2 DNA topoisomera  59.9     6.5 0.00019   19.7   2.4   22  127-148    28-49  (82)
 69 >1t94_A Polymerase (DNA direct  59.9     6.2 0.00018   19.8   2.3   17  130-146    14-30  (70)
 70 >3i1m_M 30S ribosomal protein   58.6     4.6 0.00014   20.7   1.5   20  127-146    16-35  (63)
 71 >1b43_A Protein (FEN-1); nucle  58.5     3.6 0.00011   21.3   1.0   47   91-150     1-47  (77)
 72 >3gfk_B DNA-directed RNA polym  58.5     4.6 0.00014   20.6   1.5   48   96-146    19-66  (79)
 73 >1rxw_A Flap structure-specifi  57.9     3.7 0.00011   21.3   0.9   18  130-147    17-34  (68)
 74 >2zkq_m 40S ribosomal protein   57.6     4.9 0.00015   20.5   1.5   20  127-146    27-46  (88)
 75 >3fhg_A Mjogg, N-glycosylase/D  57.4     5.7 0.00017   20.0   1.8   31  155-185     2-40  (65)
 76 >1lb2_B DNA-directed RNA polym  57.1     5.9 0.00017   20.0   1.8   46   98-146    15-60  (84)
 77 >1szp_A DNA repair protein RAD  56.9     4.8 0.00014   20.5   1.3   37   78-117     1-37  (56)
 78 >2i5h_A Hypothetical protein A  50.0       7 0.00021   19.5   1.3   41  126-170   130-170 (205)
 79 >1jx4_A DNA polymerase IV (fam  49.0     8.1 0.00024   19.0   1.5   33   78-115    18-50  (55)
 80 >3bqs_A Uncharacterized protei  48.7     6.8  0.0002   19.5   1.0   41  127-167     3-43  (93)
 81 >1t57_A Conserved protein MTH1  48.1      18 0.00052   16.7   3.1  106   56-163    55-171 (206)
 82 >3e1s_A Exodeoxyribonuclease V  47.4     3.8 0.00011   21.2  -0.4  113   87-207     6-130 (149)
 83 >3gzu_A Inner capsid protein V  47.3      10  0.0003   18.4   1.7   53   46-98    106-169 (321)
 84 >1z3e_B DNA-directed RNA polym  46.6     9.2 0.00027   18.6   1.5   49   95-146    11-59  (73)
 85 >2vqe_M 30S ribosomal protein   46.5     5.5 0.00016   20.1   0.3   20  127-146    16-35  (64)
 86 >1d8b_A SGS1 RECQ helicase; fi  45.2     8.8 0.00026   18.8   1.2   21  122-142    42-62  (81)
 87 >1ul1_X Flap endonuclease-1; p  43.2     5.5 0.00016   20.2  -0.1   30  130-168    31-60  (89)
 88 >2aq4_A DNA repair protein REV  42.6      10  0.0003   18.3   1.2   18  130-147     4-21  (67)
 89 >1f6f_A Placental lactogen; 4-  38.3      27 0.00079   15.5   5.4   63  104-166   124-193 (199)
 90 >2yuk_A Myeloid/lymphoid or mi  38.3      13  0.0004   17.5   1.2   39   68-111    36-74  (90)
 91 >2fj0_A JuvenIle hormone ester  36.9      28 0.00083   15.4   4.5   41  162-204    15-56  (64)
 92 >2p4w_A Transcriptional regula  36.3      23 0.00067   16.0   2.1   40  156-195     1-40  (48)
 93 >3fhf_A Mjogg, N-glycosylase/D  36.3      25 0.00075   15.7   2.4   38  148-185    32-76  (101)
 94 >2b1e_A Exocyst complex compon  35.9      29 0.00086   15.3   7.2   72   22-98     29-104 (106)
 95 >3fhg_A Mjogg, N-glycosylase/D  34.0      31 0.00092   15.1   3.7   22  125-146    41-62  (69)
 96 >2rhf_A DNA helicase RECQ; HRD  33.2      15 0.00044   17.3   0.8   21  122-142    41-61  (77)
 97 >2pft_A Exocytosis protein; he  32.9      32 0.00096   15.0   5.2   72   22-98     20-97  (102)
 98 >1huw_A Human growth hormone;   32.0      33 0.00099   14.9   3.8  105   59-163    68-180 (191)
 99 >1coo_A RNA polymerase alpha s  31.4      11 0.00033   18.0  -0.1   49   95-146    26-74  (98)
100 >2ziu_B Crossover junction end  28.6      17 0.00049   16.9   0.4   29   57-86     15-43  (100)
101 >2a6h_A DNA-directed RNA polym  27.6      35   0.001   14.7   1.9   49   94-145   130-178 (190)
102 >1c7v_A CAVP, calcium vector p  27.5      36  0.0011   14.7   1.9   59   70-131    10-68  (81)
103 >1l2l_A ADP-dependent glucokin  26.8      41  0.0012   14.3   3.9   74   79-171     3-78  (130)
104 >1bgx_T TAQ DNA polymerase; DN  26.4     8.7 0.00026   18.8  -1.4   16  127-142   152-167 (167)
105 >1wud_A ATP-dependent DNA heli  25.5      25 0.00074   15.7   0.9   22  122-143    49-70  (89)
106 >2cw6_A Hydroxymethylglutaryl-  25.5      11 0.00034   18.0  -0.9   20   16-35     20-39  (298)
107 >2ggm_A Centrin-2; EF-hand sup  25.1      44  0.0013   14.1   4.0   62   67-132    18-79  (87)
108 >2aja_A Ankyrin repeat family   24.8      44  0.0013   14.0   2.4   46   78-137    41-87  (156)
109 >1rq6_A 30S ribosomal protein   24.0      16 0.00047   17.1  -0.4   28  102-129     3-30  (62)
110 >1ua4_A Glucokinase, ADP-depen  23.4      47  0.0014   13.9   3.8   73   79-170     4-78  (132)
111 >2ziu_A MUS81 protein; helix-h  23.0     9.4 0.00028   18.6  -1.7   27   59-86     11-37  (82)
112 >1fpw_A Yeast frequenin, calci  22.2      37  0.0011   14.6   1.2   59   71-131     7-65  (74)
113 >3d48_P Prolactin, PRL; cytoki  21.1      52  0.0015   13.6   3.2   40  127-166   142-181 (188)
114 >2h7a_A Hypothetical protein Y  20.9      48  0.0014   13.8   1.5   21   81-101    63-83  (110)
115 >3f2b_A DNA-directed DNA polym  20.0      55  0.0016   13.4   1.7   32  134-169     1-32  (69)

No 1  
>>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} (A:1-23,A:110-225)
Probab=99.95  E-value=5.3e-28  Score=208.81  Aligned_cols=108  Identities=25%  Similarity=0.403  Sum_probs=96.1

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCH-----HHHHHHHHHCCCHHHH
Q ss_conf             42001000014567776432358888999987542100012104678776565407888-----9999999621884226
Q gi|254780383|r  117 NEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTP-----NKVEQSLLRIIPPKHQ  191 (227)
Q Consensus       117 ~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~~~-----~~~~~~l~~~~p~~~~  191 (227)
                      ++||.   .+.-+|++|||||+|||++||+|+||+++|+|||||+||++|+|+++.+..     ...+..+...++...+
T Consensus        15 ~~~~~---~~~~eL~~LpGIG~ktAd~Illfa~~~~~~pVDthv~RVl~Rlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (139)
T 1kg2_A           15 DKYGR---KTLPEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGV   91 (139)
T ss_dssp             HHHCC---CCSGHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCSTTH
T ss_pred             HHCCC---CCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             98199---879998628987278999999984498607679986775333025678996268999999987523861100


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             789999999966516489989472840331768519
Q gi|254780383|r  192 YNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       192 ~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      .++|++||+||+.+|++++|+|+.|||++.|+++++
T Consensus        92 ~~~h~~L~~~Gr~vC~~r~P~C~~CpL~~~C~~~~~  127 (139)
T 1kg2_A           92 ERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAAN  127 (139)
T ss_dssp             HHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHC
T ss_conf             177799999978881499999998978333988776


No 2  
>>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} (A:23-133)
Probab=99.92  E-value=2e-25  Score=191.51  Aligned_cols=111  Identities=50%  Similarity=0.852  Sum_probs=108.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             77778689999999996333203567998998731762000101268999999997300379999997523554442001
Q gi|254780383|r   42 ELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDN  121 (227)
Q Consensus        42 ~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g  121 (227)
                      +|.++|||++||++||||||++.++.+++.+|+++||||++++.++.+++++.|+++||++.||++|+++++.+.+.+++
T Consensus         1 el~~~d~~e~lv~~il~qq~~~~~a~~~~~~l~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~ka~~i~~~a~~~~~~~~~   80 (111)
T 2abk_A            1 ELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG   80 (111)
T ss_dssp             SSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88889879999999984536199999999988761488788754576667777674115677888999999999986041


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0000145677764323588889999875421
Q gi|254780383|r  122 KIPQTLEGLTRLPGIGRKGANVILSMAFGIP  152 (227)
Q Consensus       122 ~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p  152 (227)
                      .+|.++++|.+|||||+|||++||+|+||+|
T Consensus        81 ~~~~~~~~L~~l~GIG~~tA~~vll~~~g~P  111 (111)
T 2abk_A           81 EVPEDRAALEALPGVGRKTANVVLNTAFGWP  111 (111)
T ss_dssp             SCCSCHHHHHHSTTCCHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf             1367799999898606359999999985671


No 3  
>>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} (A:28-137)
Probab=99.92  E-value=2.3e-25  Score=191.12  Aligned_cols=110  Identities=47%  Similarity=0.791  Sum_probs=107.4

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77786899999999963332035679989987317620001012689999999973003799999975235544420010
Q gi|254780383|r   43 LYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNK  122 (227)
Q Consensus        43 l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~  122 (227)
                      +.++|||++||++||||||+++++.+++.+|+++||||++++.++.+++.+.|+++||+++||++|+++++.+.++|+|.
T Consensus         1 ~~~~dpfe~Li~~Il~Qqt~~~~a~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~g~~~~ka~~i~~~a~~~~~~~~~~   80 (110)
T 1orn_A            1 LVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGE   80 (110)
T ss_dssp             SCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99899799999999981086999999999998604998998607899999999973249999999999878999993998


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             000145677764323588889999875421
Q gi|254780383|r  123 IPQTLEGLTRLPGIGRKGANVILSMAFGIP  152 (227)
Q Consensus       123 vP~~~~~L~~LpGVG~ktA~~il~~~~~~p  152 (227)
                      +|.++++|++|||||+|||+++|+|+||+|
T Consensus        81 ~~~~~~~L~~l~GIG~~ta~~~llf~~~~P  110 (110)
T 1orn_A           81 VPRDRDELMKLPGVGRKTANVVVSVAFGVP  110 (110)
T ss_dssp             CCSCHHHHTTSTTCCHHHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf             988899997587975258999999985788


No 4  
>>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} (A:29-139)
Probab=99.91  E-value=3.1e-24  Score=183.43  Aligned_cols=109  Identities=19%  Similarity=0.455  Sum_probs=106.2

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77786899999999963332035679989987317620001012689999999973003799999975235544420010
Q gi|254780383|r   43 LYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNK  122 (227)
Q Consensus        43 l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~  122 (227)
                      .+.+|||+.||++||+|||+++++.+++.+|+++||||++++.++.++++++|+++||+++||++|+++++.+.+.+++.
T Consensus         2 r~~~d~fe~Lv~~Il~qq~s~~~a~~~~~~l~~~~~~~~~l~~~~~~~l~~~i~~~g~~~~ka~~i~~~a~~~~~~~~~~   81 (111)
T 1kea_A            2 RHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGR   81 (111)
T ss_dssp             GGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             98998799999999983196999999999999978899999839988999998976889999999999999888751599


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00014567776432358888999987542
Q gi|254780383|r  123 IPQTLEGLTRLPGIGRKGANVILSMAFGI  151 (227)
Q Consensus       123 vP~~~~~L~~LpGVG~ktA~~il~~~~~~  151 (227)
                      +|+.+++|++|||||+|||+++|+|++|+
T Consensus        82 ~~~~~~~L~~l~GIG~~tA~~~llf~~gr  110 (111)
T 1kea_A           82 VPRNRKAILDLPGVGKYTCAAVMCLAFGK  110 (111)
T ss_dssp             CCSCHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             97304676508987616899999986388


No 5  
>>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* (A:34-143)
Probab=99.89  E-value=1.4e-23  Score=179.11  Aligned_cols=109  Identities=17%  Similarity=0.321  Sum_probs=103.2

Q ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             77868999999999633320356799899873176200010126899999999730037999999752355444200100
Q gi|254780383|r   44 YYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKI  123 (227)
Q Consensus        44 ~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~v  123 (227)
                      .+.|||+.||++||+|||++..+.+++.+|+++||||+.++.++.+++.++|+++||+++|+++|..++..+ +++++.+
T Consensus         2 ~~~dpfe~Li~~Il~q~~s~~~a~~~~~rl~~~~~t~~~~~~~~~~~l~~~l~~~g~~~~k~~~i~~~~~~~-~~~~~~~   80 (110)
T 3fsp_A            2 KDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVK-TRYGGKV   80 (110)
T ss_dssp             SCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHH-HHHTTCC
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHCCCC
T ss_conf             899879999999986108788999999999997799999977899999999872671999999999899986-8637989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             001456777643235888899998754210
Q gi|254780383|r  124 PQTLEGLTRLPGIGRKGANVILSMAFGIPT  153 (227)
Q Consensus       124 P~~~~~L~~LpGVG~ktA~~il~~~~~~p~  153 (227)
                      |..+++|++|||||+|||++||+|++|+|.
T Consensus        81 ~~~~~~L~~lpGIG~~tA~~vll~~~g~pe  110 (110)
T 3fsp_A           81 PDDPDEFSRLKGVGPYTVGAVLSLAYGVPE  110 (110)
T ss_dssp             CCSHHHHHTSTTCCHHHHHHHHHHHHCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             988999951112689999999999715887


No 6  
>>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} (A:23-145)
Probab=99.89  E-value=1.4e-23  Score=179.04  Aligned_cols=110  Identities=25%  Similarity=0.319  Sum_probs=104.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77786899999999963332035679989987317-------62000101268999999997300379999997523554
Q gi|254780383|r   43 LYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIA-------DTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHIL  115 (227)
Q Consensus        43 l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~y-------pt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i  115 (227)
                      ..-+|||+.||++||||||+++++.+++.+|+++|       |||+++++++++++.++|+++||++.||++|+++++.+
T Consensus         3 ~~~~d~fe~Li~~il~qq~~~~~a~~~~~~l~~~~g~~~~~~pt~~~l~~~~~~~l~~~i~~~g~~~~ka~~i~~~a~~~   82 (123)
T 1pu6_A            3 WPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNI   82 (123)
T ss_dssp             STTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99998799999999946698999999999999987520124899999977999999999998799589999999999999


Q ss_pred             HHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             442001----0000145677764323588889999875421
Q gi|254780383|r  116 INEFDN----KIPQTLEGLTRLPGIGRKGANVILSMAFGIP  152 (227)
Q Consensus       116 ~~~~~g----~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p  152 (227)
                      .++++|    ..|+.+++|.+|||||+|||+++|+|++|+|
T Consensus        83 ~~~~~~l~~~~~~~~~~~L~~l~GIG~~tA~~illf~l~~P  123 (123)
T 1pu6_A           83 LKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKE  123 (123)
T ss_dssp             HHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
T ss_conf             98663103799467999998489966999999999987998


No 7  
>>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} (A:1-129)
Probab=99.89  E-value=3.5e-24  Score=183.06  Aligned_cols=115  Identities=13%  Similarity=0.208  Sum_probs=102.6

Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997679998777786899999999963332035679989987317620001012689999999973003799999975
Q gi|254780383|r   31 LFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIIS  110 (227)
Q Consensus        31 ~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~  110 (227)
                      .+.+.|+ +..+....|||+.||++||||||+++++++++.+|+++|+||++++.++.++++++|+++||+++||++|++
T Consensus        15 ~l~~~~~-~~~~~~~~~pfe~Li~~Il~Qq~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~Ka~~i~~   93 (129)
T 1ngn_A           15 PPRSPFN-LVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIK   93 (129)
T ss_dssp             CCCCTTC-CTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             CCCCCCC-HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9998642-146551598589999999986186999999999999988799999716758689898124479999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2355444200100001456777643235888899998754210
Q gi|254780383|r  111 LSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPT  153 (227)
Q Consensus       111 ~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~  153 (227)
                      +++.+++       +.+++|++|||||+|||++||+|+||+|-
T Consensus        94 ~a~~~~~-------e~~~~L~~l~GIG~~tA~~vll~~~grP~  129 (129)
T 1ngn_A           94 FSDEYLT-------KQWRYPIELHGIGKYGNDSYRIFCVNEWK  129 (129)
T ss_dssp             HHHHHHH-------SCCSSGGGSTTCCHHHHHHHHHHTSSCGG
T ss_pred             HHHHHHH-------HHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf             9824666-------34766562799668999999999769988


No 8  
>>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} (A:24-109)
Probab=99.86  E-value=3.9e-22  Score=169.31  Aligned_cols=86  Identities=12%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             77778689999999996333203567998998731762000101268999999997300379999997523554442001
Q gi|254780383|r   42 ELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDN  121 (227)
Q Consensus        42 ~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g  121 (227)
                      |++++|||++||++||||||+|++|.+++.+|+++||||+++++++.++|+++|+|+|||+ ||++|+++|+.|+++|||
T Consensus         1 W~~~~dp~~~Lia~iLsq~T~~~~~~~~~~~L~~~~~t~~~l~~a~~~~l~~~i~~~G~~~-Ka~~i~~~a~~i~~~~~g   79 (86)
T 1kg2_A            1 WQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGG   79 (86)
T ss_dssp             GGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCTH-HHHHHHHHHHHHHHHSTT
T ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCCC
T ss_conf             9989986999999999811849999999999999879999998608999999988468999-999999999999886079


Q ss_pred             CCHHHHH
Q ss_conf             0000145
Q gi|254780383|r  122 KIPQTLE  128 (227)
Q Consensus       122 ~vP~~~~  128 (227)
                      +||.+++
T Consensus        80 ~vP~~~e   86 (86)
T 1kg2_A           80 KFPETFE   86 (86)
T ss_dssp             SCCCSHH
T ss_pred             CCCCHHH
T ss_conf             9972899


No 9  
>>1m3q_A 8-oxoguanine DNA glycosylase; DNA repair, END product, HOGG, 8-aminoguanine, RE-ligation, hydrolase/DNA complex; HET: DRZ ANG; 1.90A {Homo sapiens} (A:123-255)
Probab=99.85  E-value=1e-21  Score=166.42  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=97.2

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77786899999999963332035679989987317620001012-----------6899999999730037999999752
Q gi|254780383|r   43 LYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAI-----------GEKKLQNYIRTIGIYRKKSENIISL  111 (227)
Q Consensus        43 l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a-----------~~~el~~~ir~~G~~~~KAk~I~~~  111 (227)
                      +...|||++||++||+|||+++++++++.+|+++|+++...+..           ..++..+.++++|++++||++|+++
T Consensus         2 l~~~dpfe~Li~~Il~Qq~~~~~a~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ka~~i~~~   81 (133)
T 1m3q_A            2 LLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSAS   81 (133)
T ss_dssp             CCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHHHHHTTCTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHH
T ss_conf             45788899999999998865999999999999980987667786543478999999736889999864747899999999


Q ss_pred             HHHHHHHHCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             355444200100----------00145677764323588889999875421
Q gi|254780383|r  112 SHILINEFDNKI----------PQTLEGLTRLPGIGRKGANVILSMAFGIP  152 (227)
Q Consensus       112 a~~i~~~~~g~v----------P~~~~~L~~LpGVG~ktA~~il~~~~~~p  152 (227)
                      |+.+.++|+|.+          ++.+++|++|||||+|||++||+|+||+|
T Consensus        82 a~~~~~~~~g~~~~~~~~~~~~~~~~~~L~~lpGIG~~tA~~ill~~l~rp  132 (133)
T 1m3q_A           82 ARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKP  132 (133)
T ss_dssp             HHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCT
T ss_pred             HHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             999874245435799771399899999998468837999999999967999


No 10 
>>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} (A:105-231)
Probab=99.84  E-value=2.2e-21  Score=164.27  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=98.7

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             777786899999999963332035679989987317620001012---------68999999997300379999997523
Q gi|254780383|r   42 ELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAI---------GEKKLQNYIRTIGIYRKKSENIISLS  112 (227)
Q Consensus        42 ~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a---------~~~el~~~ir~~G~~~~KAk~I~~~a  112 (227)
                      ++...|||+.||++||+|||+++++.+++.+|+++|++++.....         ..+.+++.++++||+++||++|+++|
T Consensus         3 ~~~~~~pfe~lv~~Il~Qq~~~~~a~~~~~~l~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~ka~~i~~~a   82 (127)
T 1mpg_A            3 LPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLA   82 (127)
T ss_dssp             CCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf             89989989999999996723299999999999998588767687656799899997699999975288665899999999


Q ss_pred             HHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55444-----20010000145677764323588889999875421
Q gi|254780383|r  113 HILIN-----EFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIP  152 (227)
Q Consensus       113 ~~i~~-----~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p  152 (227)
                      +.+.+     .+++.+|..+++|++|||||+|||++||+|+||+.
T Consensus        83 ~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~~tA~~vll~~~gr~  127 (127)
T 1mpg_A           83 NAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAK  127 (127)
T ss_dssp             HHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             999829942134467899999998658978999999999857998


No 11 
>>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} (A:1-27,A:138-226)
Probab=99.81  E-value=3.7e-20  Score=155.96  Aligned_cols=77  Identities=39%  Similarity=0.730  Sum_probs=73.0

Q ss_pred             HHHHHCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             21000121046787765654078-889999999621884226789999999966516489989472840331768519
Q gi|254780383|r  151 IPTIGVDTHIFRISNRIGLAPGK-TPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       151 ~p~~~VDthv~Rv~~Rlgl~~~~-~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      -.+|+|||||+||++||||++++ ++++++..+++++|.+.|++||++||+||+.||++++|+|+.|||++.|++|++
T Consensus        26 ~~ai~VDthV~RV~~Rlg~i~~~~~~~~~~~~l~~~ip~~~~~~~~~~Li~lGr~vC~ar~P~C~~CPL~~~C~~~~~  103 (116)
T 1orn_A           26 CEAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK  103 (116)
T ss_dssp             CCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHC
T ss_conf             998788843577999838666543046999999983865443799999999999883489999998978021778763


No 12 
>>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} (A:1-22,A:134-211)
Probab=99.80  E-value=4.3e-20  Score=155.58  Aligned_cols=76  Identities=53%  Similarity=1.066  Sum_probs=73.9

Q ss_pred             HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             1000121046787765654078889999999621884226789999999966516489989472840331768519
Q gi|254780383|r  152 PTIGVDTHIFRISNRIGLAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       152 p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      .+|+|||||+||++|+||++++++++++..+++++|.+.|.+||++||+||+.+|++++|+|+.|||++.|++|++
T Consensus        22 ~a~~VDthv~RV~~Rlg~v~~~~~~~~e~~l~~~lp~~~~~~~h~aLi~lGr~vC~~r~P~C~~CpL~~~C~~~~~   97 (100)
T 2abk_A           22 TTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK   97 (100)
T ss_dssp             CCCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9423568999999970677542046788888604870358999999999845442599999999979142888678


No 13 
>>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans} (A:1-49,A:127-233)
Probab=99.78  E-value=1.5e-19  Score=151.99  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHCCC--CH
Q ss_conf             999997523554-----4420010000145677764323588889999875421-000121046787765654078--88
Q gi|254780383|r  104 KSENIISLSHIL-----INEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIP-TIGVDTHIFRISNRIGLAPGK--TP  175 (227)
Q Consensus       104 KAk~I~~~a~~i-----~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p-~~~VDthv~Rv~~Rlgl~~~~--~~  175 (227)
                      +--..++++..+     -+.++|.+|.++++|++|||||+|||++||+|+||+| +||||+|+.|+..|+++...+  +.
T Consensus        32 ~~~~~~~~~~~~~~~~~~el~~g~~pe~~~~LlsLPGIGpkTA~~ILlfalgrpdvfpVdD~~iRr~~r~~~~~~~~~~~  111 (156)
T 2h56_A           32 RLFQFIEIAGEVQLPTKPELEGAEATTVIEKLTAIKGIGQWTAEXFXXFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGK  111 (156)
T ss_dssp             HHHHHHHHHCCEEEECCSHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSCHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf             99999998699867898926665355788888873897878999999851689977864579999999998288889989


Q ss_pred             HHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9999999621884226-----7899999999665164899894728
Q gi|254780383|r  176 NKVEQSLLRIIPPKHQ-----YNAHYWLVLHGRYVCKARKPQCQSC  216 (227)
Q Consensus       176 ~~~~~~l~~~~p~~~~-----~~~~~~li~~G~~iC~~~~P~C~~C  216 (227)
                      .+++..++.+.|...|     .++|++||++|+.+|++++|.| +|
T Consensus       112 ~~~~~~~e~~~P~~~~~~~~L~~~~~alidlGr~vC~~r~Pc~-~C  156 (156)
T 2h56_A          112 KLLIYHGKAWAPYETVACLYLWKAAGTFAEEYRSLEELLHHGN-QC  156 (156)
T ss_dssp             HHHHHHHGGGTTCHHHHHHHHHHHHTHHHHHCSSHHHHSCC-----
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC-CC
T ss_conf             9999998707899999999999408995043211887607767-89


No 14 
>>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} (A:1-28,A:140-221)
Probab=99.76  E-value=1.1e-18  Score=146.00  Aligned_cols=86  Identities=22%  Similarity=0.367  Sum_probs=73.4

Q ss_pred             HHHHHHHH----HHHHHHCCCHHHHHHHHHHHHCCCC----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             89999875----4210001210467877656540788----899999996218842267899999999665164899894
Q gi|254780383|r  142 NVILSMAF----GIPTIGVDTHIFRISNRIGLAPGKT----PNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQC  213 (227)
Q Consensus       142 ~~il~~~~----~~p~~~VDthv~Rv~~Rlgl~~~~~----~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C  213 (227)
                      +.||.|--    +.|+|+|||||+||++|+|+++.++    ..+++..+.+++|.+.|.+||++||+||+.+|++++|+|
T Consensus        14 ~~~~~~~~~~~~~~~~~~VDtnv~RV~~Rl~~v~~~~~~~~~~~l~~~~~~~lp~~~~~~~h~aLi~lG~~vC~~k~P~C   93 (110)
T 1kea_A           14 STILTFWNTDRRDFPAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKC   93 (110)
T ss_dssp             HHHHHHHHHSCCCCGCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCG
T ss_pred             HHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999998669999930224388878998637788982166999999998628813299999999998588603989999


Q ss_pred             CCCCCHHHCHHHCC
Q ss_conf             72840331768519
Q gi|254780383|r  214 QSCIISNLCKRIKQ  227 (227)
Q Consensus       214 ~~C~l~~~C~~~k~  227 (227)
                      ++|||++.|+||++
T Consensus        94 ~~CPL~~~C~~~~~  107 (110)
T 1kea_A           94 EKCGMSKLCSYYEK  107 (110)
T ss_dssp             GGCTTTTTCHHHHT
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             88989101937277


No 15 
>>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} (A:38-150)
Probab=99.76  E-value=1.3e-18  Score=145.58  Aligned_cols=101  Identities=19%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             777868999999999633320356799899873176200010126899999999730--037999999752355444200
Q gi|254780383|r   43 LYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIG--IYRKKSENIISLSHILINEFD  120 (227)
Q Consensus        43 l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G--~~~~KAk~I~~~a~~i~~~~~  120 (227)
                      +...|||+.||++||+|||+++++.+++.+|+++|+++      +.+++++++++.|  |+++||++|+++++.+.++++
T Consensus         2 ~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~~l~~~~~~~------~~~~~~~~~~~~g~~~~~~ka~~l~~~a~~~~~~~~   75 (113)
T 3fhf_A            2 KSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTL------PREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDI   75 (113)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTHHHHS------CHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75478999999999614586999999999999998718------976799999994524667889999999999988767


Q ss_pred             CCCHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             100001-----45677764323588889999875
Q gi|254780383|r  121 NKIPQT-----LEGLTRLPGIGRKGANVILSMAF  149 (227)
Q Consensus       121 g~vP~~-----~~~L~~LpGVG~ktA~~il~~~~  149 (227)
                      |.+|..     +++|++|||||+|||+++|+|+.
T Consensus        76 ~~~~~~~~~~~~~~L~~l~GIG~~tA~~~l~f~~  109 (113)
T 3fhf_A           76 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVG  109 (113)
T ss_dssp             HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT
T ss_pred             HHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             7760688976399998785832999999999967


No 16 
>>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* (A:1-33,A:144-218)
Probab=99.69  E-value=2.8e-17  Score=136.56  Aligned_cols=74  Identities=26%  Similarity=0.481  Sum_probs=67.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCH
Q ss_conf             42100012104678776565407-----888999999962188422678999999996651648998947284033176
Q gi|254780383|r  150 GIPTIGVDTHIFRISNRIGLAPG-----KTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCK  223 (227)
Q Consensus       150 ~~p~~~VDthv~Rv~~Rlgl~~~-----~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~  223 (227)
                      +.|-|+|||||+||++|+|++++     +++.+++..+.+++|.+.+.++|++||+||+.||++++|+|+.|||++.|+
T Consensus        30 ~~~~i~VDtnV~RVl~Rlg~v~~~~~~~~t~~~i~~~l~~liP~~~~~~~h~aLi~lGr~vC~~k~P~C~~CPL~~~Ck  108 (108)
T 3fsp_A           30 DLPWPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQ  108 (108)
T ss_dssp             CCGGCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCH
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCH
T ss_conf             8998652571898889860557887650378999988740366457789999999955300058999898898633277


No 17 
>>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans} (A:50-126)
Probab=99.59  E-value=7.1e-16  Score=127.14  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             68999999999633320356799899873176200010126899999999730037999999752355444200100001
Q gi|254780383|r   47 NHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQT  126 (227)
Q Consensus        47 ~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~  126 (227)
                      |||++||++||||||+++++.+++.+|+++||+++.++++..+++++.|+++||+++||++|+++|+.+++   |++|.+
T Consensus         1 dpf~~Li~~Ilsqqts~~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~ir~~G~~~~Ka~~i~~~a~~i~~---g~ip~t   77 (77)
T 2h56_A            1 NPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVES---GRLDFT   77 (77)
T ss_dssp             CHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHHTTCCHHHHHHHHHHHHHHHT---TSSCHH
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHH---CCCCCH
T ss_conf             98999999998170039999999999999860023688998637999987776410001689999999981---665310


No 18 
>>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} (A:1-22,A:146-218)
Probab=98.30  E-value=4.4e-07  Score=67.94  Aligned_cols=59  Identities=8%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             HH-HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH----------------HHHHHHHHHHHHHHHHCCCC
Q ss_conf             42-10001210467877656540788899999996218842----------------26789999999966516489
Q gi|254780383|r  150 GI-PTIGVDTHIFRISNRIGLAPGKTPNKVEQSLLRIIPPK----------------HQYNAHYWLVLHGRYVCKAR  209 (227)
Q Consensus       150 ~~-p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p~~----------------~~~~~~~~li~~G~~iC~~~  209 (227)
                      |. .+|+||+|+.|+++|+|+... ++++++..+++.+|.+                .+.+||.+|+.||+..|+.+
T Consensus        19 ~~~~VFVVDaYTrRLf~rLG~~~e-~Ydelq~~fe~~L~~d~~~~~~~~~~e~~l~~lyqefHALIVE~gK~~ckkK   94 (95)
T 1pu6_A           19 NAPAVMVVDKYSYLFLKKLGIEIE-DYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGXIVEFSKQKLELK   94 (95)
T ss_dssp             TSCTCCCCCHHHHHHHHHTTCCCC-SHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             899906204259999999089889-9999999999886898999887750002089999999999999869877898


No 19 
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:111-127,A:196-236)
Probab=97.62  E-value=1.9e-05  Score=56.89  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01456777643235888899998754210
Q gi|254780383|r  125 QTLEGLTRLPGIGRKGANVILSMAFGIPT  153 (227)
Q Consensus       125 ~~~~~L~~LpGVG~ktA~~il~~~~~~p~  153 (227)
                      +.+++|.++||||+|||++||+|++++|.
T Consensus        30 ea~~~L~~i~GIGpwTAdciLLF~L~RPn   58 (58)
T 3i0w_A           30 ECHEELKKFMGVGPQVADCIMLFSMQKYS   58 (58)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf             67899982688129999999998648988


No 20 
>>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:29-101)
Probab=96.73  E-value=0.0094  Score=38.77  Aligned_cols=63  Identities=22%  Similarity=0.305  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf             68999999999633320356799899873176200010126899999999730--0379999997523554
Q gi|254780383|r   47 NHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIG--IYRKKSENIISLSHIL  115 (227)
Q Consensus        47 ~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G--~~~~KAk~I~~~a~~i  115 (227)
                      +-|.-|+-|||.+|++.....++...|-.      .+...+.+||.+.++.+|  |+|+||++|.+.=+.+
T Consensus         4 ~lF~EL~FCILTanssA~~g~kaq~~lg~------gf~~~s~eel~~~L~~~g~RF~n~rA~yIve~R~l~   68 (73)
T 3fhg_A            4 VWFRELTLCLLTANSSFISAYQALNCLGQ------KIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKV   68 (73)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHGG------GGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             09999999996687719999999999999------882599999999999846402788999999999999


No 21 
>>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:1-66,A:131-198)
Probab=96.41  E-value=0.0033  Score=41.86  Aligned_cols=39  Identities=28%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1762000101268999999997300379999997523554442
Q gi|254780383|r   76 IADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINE  118 (227)
Q Consensus        76 ~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~  118 (227)
                      -||+|+.|+.+++++|    +.+||..+||++|+++|+.+.++
T Consensus        96 aFPTPEqLA~as~EeL----RacGlsyRKA~YI~~lAqaVadk  134 (134)
T 2jhn_A           96 GFPTQEAILKAGVEGL----RECGLSRRKAELIVEIAKEENLE  134 (134)
T ss_dssp             CCCCHHHHHHHHHHHH----HHTTCCHHHHHHHHHHHTCSSGG
T ss_pred             CCCCHHHHHCCCHHHH----HHHCCCCHHHHHHHHCCCCHHHH
T ss_conf             5589999974999998----54102300456655201101133


No 22 
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:81-110,A:237-290)
Probab=96.15  E-value=0.0076  Score=39.41  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             HHHHHHH-HHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             9875421-000121046787765654078889999999621884226789999999966
Q gi|254780383|r  146 SMAFGIP-TIGVDTHIFRISNRIGLAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGR  203 (227)
Q Consensus       146 ~~~~~~p-~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~  203 (227)
                      -|+.|.. +|||||||.||+.+.-.-..+++.+++....+.+-+ ..+-+++.|-.+.|
T Consensus        23 ~~~~~~~~AfPVDthI~rI~~~~Y~~t~k~y~~i~~f~re~fG~-yAG~AQqyLFyy~R   80 (84)
T 3i0w_A           23 DFGEGIRIAFPVDTWVKKAMMSLYVAPDVSLKKIRDFGREKFGS-LSGFAQQYLFYYAR   80 (84)
T ss_dssp             HHTTTCCCCCCCCHHHHHHHHHHTSCTTCCHHHHHHHHHHHHGG-GHHHHHHHHHHHHH
T ss_pred             HHCCCCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_conf             96799888677529999999996699999999999999987307-59999999999676


No 23 
>>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:112-130,A:199-234)
Probab=96.00  E-value=0.0042  Score=41.12  Aligned_cols=26  Identities=46%  Similarity=0.654  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             14567776432358888999987542
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANVILSMAFGI  151 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~il~~~~~~  151 (227)
                      -++.|.+++|||+.||+++|.|++++
T Consensus        29 vi~~Lt~IkGIG~WTAem~LmF~LgR   54 (55)
T 2jhn_A           29 AYEYLTSFKGIGRWTAELVLSIALGK   54 (55)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf             78898753782899999999861598


No 24 
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:128-195)
Probab=94.55  E-value=0.028  Score=35.61  Aligned_cols=39  Identities=13%  Similarity=0.087  Sum_probs=32.2

Q ss_pred             HHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             73176200010126899999999730037999999752355444
Q gi|254780383|r   74 FEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILIN  117 (227)
Q Consensus        74 ~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~  117 (227)
                      |-.||+|+.|+.+++++|    +.+||- .||++|+++|+.+.+
T Consensus        28 ~~~FP~pe~la~~~~~~L----r~~g~g-~RA~yI~~~a~~i~~   66 (68)
T 3i0w_A           28 YYAFPTVDKLHEFTEKDF----EECTAG-FRAKYLKDTVDRIYN   66 (68)
T ss_dssp             EECCCCHHHHTTCCHHHH----HHTTCG-GGHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHCCCHHHH----HHCCHH-HHHHHHHHHHHHHHC
T ss_conf             303499999971899998----750267-899999999999972


No 25 
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=93.15  E-value=0.033  Score=35.10  Aligned_cols=69  Identities=19%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             CHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0001012689999999973-003799999975235--54442001000014567776432358888999987542
Q gi|254780383|r   80 PQKMLAIGEKKLQNYIRTI-GIYRKKSENIISLSH--ILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI  151 (227)
Q Consensus        80 ~e~l~~a~~~el~~~ir~~-G~~~~KAk~I~~~a~--~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~  151 (227)
                      ...+....+.++-..+-.+ |.-..+|..|...-.  .+.+   ...-.|.+.|.++||||+|||.-|.....++
T Consensus        59 l~GF~~~~er~~F~~L~~V~GIGpk~Al~iL~~~~~~el~~---aI~~~d~~~L~~ipGIG~KtA~rIi~eLk~k  130 (191)
T 1ixr_A           59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLAR---ALLEGDARLLTSASGVGRRLAERIALELKGK  130 (191)
T ss_dssp             EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHH---HHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred             EECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH---HHHCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             77108289999999985758847788999985599999999---9982899985138884568899999999864


No 26 
>>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} (A:1-128)
Probab=93.09  E-value=0.18  Score=30.16  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             689999999973003799999975235544420010000145677764323588889999875
Q gi|254780383|r   87 GEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAF  149 (227)
Q Consensus        87 ~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~  149 (227)
                      -.+++.++..--|-. -|+.....++..| +.+...| .+.+++.+|||||+++|+.|--+.-
T Consensus        19 ~L~~la~~~e~~g~~-~r~~aY~kAa~~i-~~lp~~I-~s~~~~~~lpgIG~~ia~~I~E~l~   78 (128)
T 2bcq_A           19 KLEVLAKAYSVQGDK-WRALGYAKAINAL-KSFHKPV-TSYQEACSIPGIGKRMAEKIIEILE   78 (128)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHH-HSCCSCC-CCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC-HHHHHHHHHHHHH-HHCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             999999999984995-8999999999999-8598665-8999982799964899999999997


No 27 
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:66-144)
Probab=92.83  E-value=0.21  Score=29.70  Aligned_cols=54  Identities=28%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9973003799999975235--54442001000014567776432358888999987542
Q gi|254780383|r   95 IRTIGIYRKKSENIISLSH--ILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI  151 (227)
Q Consensus        95 ir~~G~~~~KAk~I~~~a~--~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~  151 (227)
                      +.-.|.-...|-.|.....  .+.+   -..-.|.+.|.++||||+|||.-|....-++
T Consensus        11 ~~V~GIGpk~Al~iLs~~~~~el~~---aI~~~D~~~L~~ipGIG~KtAerii~eLk~K   66 (79)
T 1cuk_A           11 IKTNGVGPKLALAILSGMSAQQFVN---AVEREEVGALVKLPGIGKKTAERLIVEMKDR   66 (79)
T ss_dssp             HHSSSCCHHHHHHHHHHSCHHHHHH---HHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred             HCCCCCCHHHHHHHHCCCCHHHHHH---HHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             3478848999999975799999999---9992899998419998899999999999988


No 28 
>>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} (A:1-119)
Probab=92.74  E-value=0.21  Score=29.64  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997523554442001000014567776432358888999987
Q gi|254780383|r  105 SENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus       105 Ak~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      +.....++..| +.+.-.| .+.+++.+|||||+++|+.|--+.
T Consensus        36 ~~aY~rAa~~l-~~~p~~i-~s~~~~~~lpgiG~~ia~~I~e~l   77 (119)
T 2fmp_A           36 YNAYRKAASVI-AKYPHKI-KSGAEAKKLPGVGTKIAEKIDEFL   77 (119)
T ss_dssp             HHHHHHHHHHH-HHCSSCC-CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHCCCCC-CCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99999999999-8599554-789998479996489999999999


No 29 
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:80-154)
Probab=92.31  E-value=0.19  Score=30.02  Aligned_cols=26  Identities=35%  Similarity=0.626  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01456777643235888899998754
Q gi|254780383|r  125 QTLEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus       125 ~~~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      .|.+.|.++||||+|||.-|+....+
T Consensus        41 ~D~~~L~~ipGIG~KtA~rii~ELk~   66 (75)
T 2ztd_A           41 GNVAALTRVPGIGKRGAERMVLELRD   66 (75)
T ss_dssp             TCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred             CCHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             68899850888356889999999841


No 30 
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:1-118)
Probab=92.29  E-value=0.04  Score=34.57  Aligned_cols=43  Identities=14%  Similarity=0.289  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7999999752355----444200100001456777643235888899
Q gi|254780383|r  102 RKKSENIISLSHI----LINEFDNKIPQTLEGLTRLPGIGRKGANVI  144 (227)
Q Consensus       102 ~~KAk~I~~~a~~----i~~~~~g~vP~~~~~L~~LpGVG~ktA~~i  144 (227)
                      ..-|..|.++...    -+++.....|.+..+|.+++|||++||...
T Consensus        67 ~~~a~kI~E~l~tG~~~~le~l~~~~~~~l~~l~~i~GiGp~ta~~l  113 (118)
T 2w9m_A           67 KGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSL  113 (118)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             89999999999849828899987025178999857898789999999


No 31 
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=91.99  E-value=0.23  Score=29.45  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH----------HHHHHH
Q ss_conf             45677764323588889999-87542-1000121046787765654078889999999621884----------226789
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILS-MAFGI-PTIGVDTHIFRISNRIGLAPGKTPNKVEQSLLRIIPP----------KHQYNA  194 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~-~~~~~-p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p~----------~~~~~~  194 (227)
                      +..|.++||||+|+|-.+|. |.... -.......+.++.+-=|+ ..++.+++-.+|+.-++.          ....+.
T Consensus        71 F~~L~~V~GIGpk~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGI-G~KtA~rIi~eLk~k~~~~~~~~~~~~~~~~~e~  149 (191)
T 1ixr_A           71 FELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGV-GRRLAERIALELKGKVPPHLLAGEKVESEAAEEA  149 (191)
T ss_dssp             HHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTC-CHHHHHHHHHHHTTTSCSCC--------------
T ss_pred             HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             999857588477889999855999999999982899985138884-5688999999998642521001123355568999


Q ss_pred             HHHHHHHH
Q ss_conf             99999996
Q gi|254780383|r  195 HYWLVLHG  202 (227)
Q Consensus       195 ~~~li~~G  202 (227)
                      -.+|+.+|
T Consensus       150 ~~aL~~LG  157 (191)
T 1ixr_A          150 VMALAALG  157 (191)
T ss_dssp             --------
T ss_pred             HHHHHHCC
T ss_conf             99999869


No 32 
>>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} (A:1-66)
Probab=91.92  E-value=0.078  Score=32.59  Aligned_cols=28  Identities=39%  Similarity=0.623  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0145677764323588889999875421
Q gi|254780383|r  125 QTLEGLTRLPGIGRKGANVILSMAFGIP  152 (227)
Q Consensus       125 ~~~~~L~~LpGVG~ktA~~il~~~~~~p  152 (227)
                      +-.+.|.+|||||+|||.=+..+....|
T Consensus         9 ~LI~~l~~LPGIG~KsA~Rla~~lL~~~   36 (66)
T 1vdd_A            9 SLIRELSRLPGIGPKSAQRLAFHLFEQP   36 (66)
T ss_dssp             HHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf             9999996789988999999999997299


No 33 
>>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} (A:1-154)
Probab=91.85  E-value=0.3  Score=28.62  Aligned_cols=44  Identities=16%  Similarity=0.263  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999975235544420010000145677764323588889999875
Q gi|254780383|r  104 KSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAF  149 (227)
Q Consensus       104 KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~  149 (227)
                      |+.....++..| +.+.-.| .+.+++.+|||||+++|+.|--+.-
T Consensus        58 r~~aYr~Aa~~l-~~~p~~I-~s~~~l~~lpgIG~~ia~~I~E~l~  101 (154)
T 1jms_A           58 SCLAFMRASSVL-KSLPFPI-TSMKDTEGIPCLGDKVKSIIEGIIE  101 (154)
T ss_dssp             HHHHHHHHHHHH-HTCSSCC-CSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             799999999999-8599777-9999983799964999999999999


No 34 
>>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} (A:1-129)
Probab=91.40  E-value=0.28  Score=28.80  Aligned_cols=18  Identities=39%  Similarity=0.495  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             145677764323588889
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANV  143 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~  143 (227)
                      ...+|.+++|||++||..
T Consensus       100 ~l~~l~~i~GvG~~~a~~  117 (129)
T 2ihm_A          100 TMKLFTQVFGVGVKTANR  117 (129)
T ss_dssp             HHHHHHTSTTCCHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHH
T ss_conf             999998555778899999


No 35 
>>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus} (A:)
Probab=91.32  E-value=0.25  Score=29.16  Aligned_cols=58  Identities=7%  Similarity=-0.034  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68999999997300379999997523554442001000014567776432358888999987
Q gi|254780383|r   87 GEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus        87 ~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      -.+++.+....-|-++  +.....++..| ..+...| .+.++|.+|||||+++|+.|.-+.
T Consensus        21 ~L~~la~~~~~~g~~r--~~aY~kA~~sl-k~~p~pi-~s~~~l~~lpgiG~~ia~kI~e~l   78 (87)
T 2kp7_A           21 WLTEWRDEAASRGRHT--RFVFQKALRSL-QRYPLPL-RSGKEAKILQHFGDRLCRMLDEKL   78 (87)
T ss_dssp             HHHHHHHHHHHHTCTT--HHHHHHHHHHH-HHCCSCC-CSHHHHHTCTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHH--HHHHHHHHHHH-HHCCCCC-CCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9999999999708468--99999999999-9789887-889998738998789999999999


No 36 
>>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:304-377)
Probab=91.19  E-value=0.14  Score=30.89  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1268999999997300379999997523554442001---00001456777643235888899998754
Q gi|254780383|r   85 AIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDN---KIPQTLEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus        85 ~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g---~vP~~~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      +.+...+-.-|+.+|-  ..|+.       |.+.|+.   -...+.++|.++||||+++|..|..+--+
T Consensus         7 ~~~~~~~L~~I~giG~--~~a~~-------L~~~fgsl~~i~~as~~~L~~v~GiG~~~A~~i~~~~~~   66 (74)
T 3c1y_A            7 SARGYRLLKTVARIPL--SIGYN-------VVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISS   66 (74)
T ss_dssp             CCCSHHHHHHTSCCCH--HHHHH-------HHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCCH--HHHHH-------HHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             7316888733999989--99999-------999853899998579988854478469999999999999


No 37 
>>1m3q_A 8-oxoguanine DNA glycosylase; DNA repair, END product, HOGG, 8-aminoguanine, RE-ligation, hydrolase/DNA complex; HET: DRZ ANG; 1.90A {Homo sapiens} (A:96-122,A:256-317)
Probab=91.12  E-value=0.3  Score=28.66  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=17.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHH
Q ss_conf             75421000121046787765
Q gi|254780383|r  148 AFGIPTIGVDTHIFRISNRI  167 (227)
Q Consensus       148 ~~~~p~~~VDthv~Rv~~Rl  167 (227)
                      -|.--+|||||||.||+.|.
T Consensus        23 ~~~~~AvPVDTHI~rIa~r~   42 (89)
T 1m3q_A           23 KFQGVAVPVEVHMWHIAQRD   42 (89)
T ss_dssp             HSTTCCCCCSHHHHHHHHHH
T ss_pred             HCCCCEEEEEHHHHHHHHHH
T ss_conf             77897677519999999997


No 38 
>>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:235-295)
Probab=90.35  E-value=0.73  Score=26.05  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=35.2

Q ss_pred             HHHCCC-HHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             000121-046787765654-07888999999962188422678999999996651
Q gi|254780383|r  153 TIGVDT-HIFRISNRIGLA-PGKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYV  205 (227)
Q Consensus       153 ~~~VDt-hv~Rv~~Rlgl~-~~~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~i  205 (227)
                      +||||| +|.|++.++-.. ...+..+++....+.+- ...+.+.+.|-.++|+-
T Consensus         1 vFPvDtVWIkrim~~~Y~~~~~~s~~~i~~f~r~~FG-~yaGyAQqYLF~y~R~~   54 (61)
T 2jhn_A            1 VFPADDLGVRRAVSRLYFNGEIQSAEKVREIARERFG-RFARDILFYLFLYDRFF   54 (61)
T ss_dssp             CCCTTCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHCHHH
T ss_conf             4237579999999997088889999999999987566-69999999999828332


No 39 
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:1-118)
Probab=89.66  E-value=0.2  Score=29.80  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999975235544420010000-145677764323588889999875
Q gi|254780383|r  105 SENIISLSHILINEFDNKIPQ-TLEGLTRLPGIGRKGANVILSMAF  149 (227)
Q Consensus       105 Ak~I~~~a~~i~~~~~g~vP~-~~~~L~~LpGVG~ktA~~il~~~~  149 (227)
                      +..-..++..| +.++-.+.. +.++|.+|||||+++|+.|--+.-
T Consensus        34 ~~aYr~Aa~~i-~~l~~~i~~~~~~~l~~lpGIG~~~a~kI~E~l~   78 (118)
T 2w9m_A           34 SRAYRSAARSL-EELNEETPELLAREFTGIPKVGKGIAAELSDFAR   78 (118)
T ss_dssp             HHHHHHHHHHH-HSCC----------CCSSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999999999-9688236675498862599987899999999998


No 40 
>>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* (A:)
Probab=89.43  E-value=1.4  Score=24.14  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHC
Q ss_conf             8999999999633320356799899873176--2000101268999999997300--379999997523554---44200
Q gi|254780383|r   48 HFTLIVAVLLSAQSTDVNVNKATKHLFEIAD--TPQKMLAIGEKKLQNYIRTIGI--YRKKSENIISLSHIL---INEFD  120 (227)
Q Consensus        48 p~~~LVa~iLs~qT~d~~v~~~~~~L~~~yp--t~e~l~~a~~~el~~~ir~~G~--~~~KAk~I~~~a~~i---~~~~~  120 (227)
                      -|+.|+-++.-+==++..|.+--+.+-+.|.  +|+.++..++++++.++.--|.  .+.|-..++.=|+.+   .++||
T Consensus        31 lFE~L~Le~fQaGLsW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~Ll~d~~IIRnr~KI~Avi~NA~~~~~i~~e~g  110 (183)
T 2ofk_A           31 LFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGE  110 (183)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999975248799999999999999967899999708999999884433313304689999999999999987259


Q ss_pred             C
Q ss_conf             1
Q gi|254780383|r  121 N  121 (227)
Q Consensus       121 g  121 (227)
                      +
T Consensus       111 s  111 (183)
T 2ofk_A          111 S  111 (183)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


No 41 
>>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (A:)
Probab=89.22  E-value=0.26  Score=29.04  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=24.6

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             554442001---000014567776432358888999987
Q gi|254780383|r  113 HILINEFDN---KIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus       113 ~~i~~~~~g---~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      +.|.+.|++   -.-.+.++|.++||||++.|..|.-|.
T Consensus        33 ~~L~~~F~s~~~i~~A~~~~L~~v~GiG~~~A~~i~~~~   71 (89)
T 1z00_A           33 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL   71 (89)
T ss_dssp             HHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHCHHCCCCHHHHHHHHHHH
T ss_conf             999999099478766547510000332799999999998


No 42 
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:80-154)
Probab=88.90  E-value=0.21  Score=29.72  Aligned_cols=61  Identities=13%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf             145677764323588889999-87542-100012104678776565407888999999962188
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANVILS-MAFGI-PTIGVDTHIFRISNRIGLAPGKTPNKVEQSLLRIIP  187 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~il~-~~~~~-p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p  187 (227)
                      -++.|.++.|||+|+|-.||+ +..+. -..+...++.++..==|+ ..|+.+++-.+|..-+.
T Consensus         7 ~F~~L~~V~GIGpk~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGI-G~KtA~rii~ELk~k~~   69 (75)
T 2ztd_A            7 LFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGI-GKRGAERMVLELRDKVG   69 (75)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTC-CHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHCCCCC-CHHHHHHHHHHHHCCCC
T ss_conf             9999854132236666232215776777788853688998508883-56889999999841112


No 43 
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:66-144)
Probab=88.42  E-value=0.21  Score=29.66  Aligned_cols=61  Identities=20%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf             145677764323588889999-87542-100012104678776565407888999999962188
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANVILS-MAFGI-PTIGVDTHIFRISNRIGLAPGKTPNKVEQSLLRIIP  187 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~il~-~~~~~-p~~~VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p  187 (227)
                      -+..|.++.|||+|+|=.||+ +..+. -..+...++.++.+==|+ ..|+.+++--+|..-++
T Consensus         6 ~F~~L~~V~GIGpk~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGI-G~KtAerii~eLk~K~~   68 (79)
T 1cuk_A            6 LFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGI-GKKTAERLIVEMKDRFK   68 (79)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTC-CHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCC-CHHHHHHHHHHHHHHHH
T ss_conf             9998734788489999999757999999999992899998419998-89999999999998887


No 44 
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95)
Probab=88.35  E-value=0.76  Score=25.91  Aligned_cols=27  Identities=22%  Similarity=0.145  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             001456777643235888899998754
Q gi|254780383|r  124 PQTLEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus       124 P~~~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      ..+.++|.++||||+++|..|.-+.-+
T Consensus        64 ~As~e~L~~i~Gig~~~A~~I~~~~~~   90 (95)
T 1pzn_A           64 VASPIELKEVAGISEGTALKIIQAARK   90 (95)
T ss_dssp             TCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             289999997549899999999999987


No 45 
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95)
Probab=88.33  E-value=0.49  Score=27.20  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=23.5

Q ss_pred             HHHHHHC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8998731-762000101268999999997300379999997523554
Q gi|254780383|r   70 TKHLFEI-ADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHIL  115 (227)
Q Consensus        70 ~~~L~~~-ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i  115 (227)
                      ..+|.++ |.|++++..|+.++|.++   -|+...+|..|++..+..
T Consensus        48 a~~L~~~~~~s~e~i~~As~e~L~~i---~Gig~~~A~~I~~~~~~~   91 (95)
T 1pzn_A           48 AEKLREAGYDTLEAIAVASPIELKEV---AGISEGTALKIIQAARKA   91 (95)
T ss_dssp             HHHHHTTTCCSHHHHHTCCHHHHHHH---HCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHCCHHHHHHH---HCCCHHHHHHHHHHHHHH
T ss_conf             99999859971999982899999975---498999999999999873


No 46 
>>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=88.13  E-value=0.23  Score=29.46  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=23.8

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             554442001---000014567776432358888999987
Q gi|254780383|r  113 HILINEFDN---KIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus       113 ~~i~~~~~g---~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      +.|.+.||.   ..-.+.++|.+++|||+++|..|.-|-
T Consensus        38 ~~L~~~Fgs~~~i~~As~eeL~~v~gIG~~~A~~I~~~l   76 (78)
T 1kft_A           38 QMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL   76 (78)
T ss_dssp             HHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             999999099899985789999738998999999999997


No 47 
>>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} (A:1-121)
Probab=87.49  E-value=1.4  Score=24.12  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHC
Q ss_conf             8999999999633320356799899873176--2000101268999999997300--379999997523554---44200
Q gi|254780383|r   48 HFTLIVAVLLSAQSTDVNVNKATKHLFEIAD--TPQKMLAIGEKKLQNYIRTIGI--YRKKSENIISLSHIL---INEFD  120 (227)
Q Consensus        48 p~~~LVa~iLs~qT~d~~v~~~~~~L~~~yp--t~e~l~~a~~~el~~~ir~~G~--~~~KAk~I~~~a~~i---~~~~~  120 (227)
                      -|+.|+-+++-+=-++..|.+--+.+-+.|.  +|+.++..+++++++++.--|.  .+.|-+.++.=|+.+   .++||
T Consensus        31 lFe~L~le~fQaGLsW~~Vl~Kr~~fr~aF~~Fd~~~va~~~e~~ie~l~~d~~iIRn~~KI~avi~NA~~~l~i~~e~g  110 (121)
T 2jg6_A           31 LFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYG  110 (121)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999975258699999999999999967998999768999999885276722357889999999999999998628


Q ss_pred             C
Q ss_conf             1
Q gi|254780383|r  121 N  121 (227)
Q Consensus       121 g  121 (227)
                      +
T Consensus       111 s  111 (121)
T 2jg6_A          111 S  111 (121)
T ss_dssp             C
T ss_pred             C
T ss_conf             9


No 48 
>>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=86.59  E-value=1.1  Score=24.92  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0101268999999997300379999997523554442001000014567776432358888999987
Q gi|254780383|r   82 KMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus        82 ~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      ++=.|+.++|..+   -|+...+|+.|++.    ++.+|+ . .++++|..++|+|+++..-+..+.
T Consensus        33 diNtAs~~eL~~l---pgig~~~A~~Ii~~----R~~~G~-f-~siedL~~v~gi~~~~~~~l~~~~   90 (98)
T 2edu_A           33 LLNEGSARDLRSL---QRIGPKKAQLIVGW----RELHGP-F-SQVEDLERVEGITGKQMESFLKAN   90 (98)
T ss_dssp             HHHHSCHHHHHHS---TTCCHHHHHHHHHH----HHHHCC-C-SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHC---CCCCHHHHHHHHHH----HHHCCC-C-CCHHHHHCCCCCCHHHHHHHHHHC
T ss_conf             1357999999757---89899999999999----998589-5-889998258898999999999828


No 49 
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:499-568)
Probab=86.17  E-value=0.52  Score=27.02  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01268999999997300379999997523554442001000014567776432358888999987
Q gi|254780383|r   84 LAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus        84 ~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      =.|+.++|+.+   -|+...+|++|++.    ++++|+ + .++++|..++|+|+++.+-+..|.
T Consensus         5 N~A~~~~L~~l---pgig~~~A~~Ii~~----R~~~G~-f-~s~~dL~~v~gl~~~~~~~l~~~i   60 (70)
T 3bzc_A            5 NTASAALLARI---SGLNSTLAQNIVAH----RDANGA-F-RTRDELKKVSRLGEKTFEQAAGFL   60 (70)
T ss_dssp             TTCCHHHHHTS---TTCCHHHHHHHHHH----HHHHCC-C-SSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred             HHHHHHHHHHC---CCCCHHHHHHHHHH----HHHCCC-C-CCHHHHHHCCCCCHHHHHHCCEEE
T ss_conf             87548888660---69788999999999----996699-5-779999856788812898718089


No 50 
>>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:499-568)
Probab=85.18  E-value=0.43  Score=27.59  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             014567776432358888999987
Q gi|254780383|r  125 QTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus       125 ~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      .+.++|.+|||||++.|..|+.+-
T Consensus         7 A~~~~L~~lpgig~~~A~~Ii~~R   30 (70)
T 3bzc_A            7 ASAALLARISGLNSTLAQNIVAHR   30 (70)
T ss_dssp             CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             548888660697889999999999


No 51 
>>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} (U:48-134)
Probab=84.61  E-value=0.45  Score=27.47  Aligned_cols=22  Identities=14%  Similarity=0.225  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1456777643235888899998
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANVILSM  147 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~il~~  147 (227)
                      +.++|.+|||||+++|..|+.+
T Consensus        14 ~~~~L~~ipGig~~~A~~Iv~~   35 (87)
T 1s5l_U           14 NIAAFIQYRGLYPTLAKLIVKN   35 (87)
T ss_dssp             CGGGGGGSTTCTHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8999977103469999999982


No 52 
>>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} (A:)
Probab=83.81  E-value=0.42  Score=27.64  Aligned_cols=22  Identities=45%  Similarity=0.557  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1456777643235888899998
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANVILSM  147 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~il~~  147 (227)
                      +.++|.++||||++.|+.|+.+
T Consensus        25 ~~~~L~~lpGig~~~A~~Ii~~   46 (75)
T 2duy_A           25 SLEELXALPGIGPVLARRIVEG   46 (75)
T ss_dssp             CHHHHTTSTTCCHHHHHHHHHT
T ss_pred             CHHHHHHCCCCCHHHHHHHHHC
T ss_conf             7999977789899999999986


No 53 
>>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} (A:)
Probab=83.48  E-value=1.8  Score=23.47  Aligned_cols=42  Identities=14%  Similarity=0.340  Sum_probs=26.3

Q ss_pred             HHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9989987317620001012689999999973003799999975235
Q gi|254780383|r   68 KATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSH  113 (227)
Q Consensus        68 ~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~  113 (227)
                      +..+.|.++|.|.+.+.+|+.+||.++   .| ....|+.|.++.+
T Consensus        15 ~~a~~Ll~~f~Si~~i~~As~eeL~~i---~g-g~~~A~~i~~~l~   56 (63)
T 2a1j_A           15 KNCRSLMHHVKNIAELAALSQDELTSI---LG-NAANAKQLYDFIH   56 (63)
T ss_dssp             HHHHHHHHHCSSHHHHHTCCHHHHHHH---HS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHCCHHHHHHC---CC-CHHHHHHHHHHHC
T ss_conf             999999998078999986999999778---59-6899999999982


No 54 
>>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} (A:)
Probab=83.21  E-value=1  Score=25.00  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=13.2

Q ss_pred             CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             762000101268999999997300379999997523554
Q gi|254780383|r   77 ADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHIL  115 (227)
Q Consensus        77 ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i  115 (227)
                      +.|.++|+.+++++|.++   .|+...+|.+|+..++.+
T Consensus        46 i~Tv~~la~~~~~~L~~i---~G~~~~~a~~i~~~ar~~   81 (114)
T 1b22_A           46 FHTVEAVAYAPKKELINI---KGISEAKADKILAEAAKL   81 (114)
T ss_dssp             CSSGGGBTSSBHHHHHTT---TTCSTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCHHHHHHH---CCCCHHHHHHHHHHHHHH
T ss_conf             853999985899999862---063699999999999986


No 55 
>>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} (A:149-197)
Probab=81.90  E-value=0.57  Score=26.77  Aligned_cols=23  Identities=52%  Similarity=0.798  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             456777643235888899998754
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      ...|.++||||++++...|-. ||
T Consensus        13 ~s~L~~IpGIG~k~~~~LL~~-Fg   35 (49)
T 2bgw_A           13 LYILQSFPGIGRRTAERILER-FG   35 (49)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHH-HS
T ss_pred             HHHHHCCCCCCHHHHHHHHHH-CC
T ss_conf             888853568997899999998-69


No 56 
>>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B (A:)
Probab=80.85  E-value=1.6  Score=23.83  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=28.3

Q ss_pred             HHHHHHC-CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8998731-762000101268999999997300379999997523554
Q gi|254780383|r   70 TKHLFEI-ADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHIL  115 (227)
Q Consensus        70 ~~~L~~~-ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i  115 (227)
                      ..+|.+. |.|.++|+.+++++|.++   -|+...+|..|+..|+.+
T Consensus        20 a~~L~~aGi~TvedLa~a~~~eL~~i---~Gi~~~~A~~ii~~Ar~~   63 (70)
T 1wcn_A           20 AFKLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARNI   63 (70)
T ss_dssp             HHHHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHCHHHHHHH---CCCCHHHHHHHHHHHHHC
T ss_conf             99999969975999987299999765---179999999999999865


No 57 
>>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3a0b_U* 3a0h_U* (U:)
Probab=80.43  E-value=0.85  Score=25.61  Aligned_cols=61  Identities=11%  Similarity=0.220  Sum_probs=33.5

Q ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             17620001012689999999973003799999975235544420010000145677764323588889999875
Q gi|254780383|r   76 IADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAF  149 (227)
Q Consensus        76 ~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~  149 (227)
                      .....-++=.|+.++|..+   -|+...+|++|++        |++ + .++++|..++|||.++-.-+.-|..
T Consensus        20 ~~~~~vdIN~As~~~L~~i---pGig~~~A~~Iv~--------~gp-f-~s~~dL~~v~gi~~~~~~~i~~~l~   80 (104)
T 3bz1_U           20 AYGEKIDLNNTNIAAFIQY---RGLYPTLAKLIVK--------NAP-Y-ESVEDVLNIPGLTERQKQILRENLE   80 (104)
T ss_dssp             SBTTBEETTSSCGGGGGGS---TTTTHHHHHHHHH--------SCC-C-SSGGGGGGCTTCCHHHHHHHHHHGG
T ss_pred             CCCCCEECCCCCHHHHHHC---CCCCHHHHHHHHH--------CCC-C-CCHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             1588567722899999777---5869999999997--------089-7-8799996179989999999998761


No 58 
>>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:157-220)
Probab=79.10  E-value=2.4  Score=22.62  Aligned_cols=24  Identities=13%  Similarity=0.170  Sum_probs=10.7

Q ss_pred             HHHHHCCCCCHHHCCCCHHHHHHH
Q ss_conf             998731762000101268999999
Q gi|254780383|r   71 KHLFEIADTPQKMLAIGEKKLQNY   94 (227)
Q Consensus        71 ~~L~~~ypt~e~l~~a~~~el~~~   94 (227)
                      ..|.++|.|++++.+|+.+||.++
T Consensus        26 ~~L~~~F~s~~~i~~As~eeL~~v   49 (64)
T 2nrt_A           26 KKLIEHFGSLENIRSASLEEIARV   49 (64)
T ss_dssp             HHHHHHHCSHHHHHTSCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHCCCHHHHHHC
T ss_conf             999998689999970999999868


No 59 
>>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=78.70  E-value=0.81  Score=25.76  Aligned_cols=38  Identities=16%  Similarity=0.147  Sum_probs=16.6

Q ss_pred             HHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99873176200010126899999999730037999999752
Q gi|254780383|r   71 KHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISL  111 (227)
Q Consensus        71 ~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~  111 (227)
                      ..|.+.|.|++++.+|+.+||.++   -|....+|..|+++
T Consensus        38 ~~L~~~Fgs~~~i~~As~eeL~~v---~gIG~~~A~~I~~~   75 (78)
T 1kft_A           38 QMLLKYMGGLQGLRNASVEEIAKV---PGISQGLAEKIFWS   75 (78)
T ss_dssp             HHHHHHHSCHHHHHHCCHHHHTTS---SSTTSHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHCCHHHHHHC---CCCCHHHHHHHHHH
T ss_conf             999999099899985789999738---99899999999999


No 60 
>>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (B:1-71)
Probab=76.95  E-value=3.4  Score=21.53  Aligned_cols=20  Identities=20%  Similarity=0.501  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             45677764323588889999
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~  146 (227)
                      .+.|.++||||++++..+|.
T Consensus        17 ~~~L~~ipGIg~k~~~~Ll~   36 (71)
T 1z00_B           17 QDFLLKMPGVNAKNCRSLMH   36 (71)
T ss_dssp             HHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHH
T ss_conf             99998089988999999999


No 61 
>>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:181-225,A:375-471)
Probab=76.93  E-value=2.9  Score=22.02  Aligned_cols=90  Identities=20%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             20001012689999999973003799999975235544420010000145677764323588889999875421000121
Q gi|254780383|r   79 TPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDT  158 (227)
Q Consensus        79 t~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDt  158 (227)
                      ++..+...+.++|+.......+..              +-|...|.-...+|.+-.|||+|||.-.|- +||.|.-    
T Consensus        47 siagilatdleeier~yeegrlse--------------eayraaveiqlaeltkkegvgrktaerllr-afgnper----  107 (142)
T 2csb_A           47 SIAGILATDLEEIERXYEEGRLSE--------------EAYRAAVEIQLAELTKKEGVGRKTAERLLR-AFGNPER----  107 (142)
T ss_dssp             SHHHHHTSCHHHHHHHHHHTSSCH--------------HHHHHHHHHHHHHHHTSTTCCHHHHHHHHH-HHSSHHH----
T ss_pred             HHHHHHHCCHHHHHHHHHCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHCCHHH----
T ss_conf             888898604999999987156448--------------999888987799776540645657999999-7099899----


Q ss_pred             HHHHHHHHHHHHCCCCHHH-HHHHHHHCCCH
Q ss_conf             0467877656540788899-99999621884
Q gi|254780383|r  159 HIFRISNRIGLAPGKTPNK-VEQSLLRIIPP  188 (227)
Q Consensus       159 hv~Rv~~Rlgl~~~~~~~~-~~~~l~~~~p~  188 (227)
                       |..+..-+.+.+-.+.+- -++.|..++|.
T Consensus       108 -vkqlarefeieklasvegvgervlrslvpg  137 (142)
T 2csb_A          108 -VKQLAREFEIEKLASVEGVGERVLRSLVPG  137 (142)
T ss_dssp             -HHHHHHTTCHHHHHTSTTCSHHHHHHHSTT
T ss_pred             -HHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             -999998875888750033289999986534


No 62 
>>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} (A:)
Probab=76.06  E-value=0.62  Score=26.50  Aligned_cols=23  Identities=35%  Similarity=0.719  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             456777643235888899998754
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      .--+.++||||+++|..++.. ||
T Consensus       172 ~~~~~~I~~IG~~~a~~Ll~~-Fg  194 (226)
T 3c65_A          172 HSVLDDIPGVGEKRKKALLNY-FG  194 (226)
T ss_dssp             ------------------------
T ss_pred             CCHHHHHHHHCHHHHHHHHHH-CC
T ss_conf             176889987479999999998-58


No 63 
>>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} (A:1-49)
Probab=73.49  E-value=1.3  Score=24.41  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             456777643235888899998754
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      .-.|..+||||+++|...+-. |+
T Consensus        13 ~~~L~~I~gVG~~~ak~Ll~~-Fg   35 (49)
T 1x2i_A           13 RLIVEGLPHVSATLARRLLKH-FG   35 (49)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHH-HC
T ss_pred             HHHHCCCCCCCHHHHHHHHHH-CC
T ss_conf             999858999789999999997-06


No 64 
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:210-274)
Probab=70.50  E-value=1.7  Score=23.49  Aligned_cols=18  Identities=28%  Similarity=0.281  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             777643235888899998
Q gi|254780383|r  130 LTRLPGIGRKGANVILSM  147 (227)
Q Consensus       130 L~~LpGVG~ktA~~il~~  147 (227)
                      +-.+||||+|||.-++..
T Consensus        18 ipGV~GIGpKtA~~li~~   35 (65)
T 1a76_A           18 PGGVKGIGFKRAYELVRS   35 (65)
T ss_dssp             TTTTTTCCHHHHHHHHHH
T ss_pred             CCCCCCEEHHHHHHHHHH
T ss_conf             555685629999999997


No 65 
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:427-542)
Probab=68.76  E-value=3.2  Score=21.72  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             HHHHHHH--CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             9899873--17620001012689999999973003799999975235544420010000-14567776432358888999
Q gi|254780383|r   69 ATKHLFE--IADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQ-TLEGLTRLPGIGRKGANVIL  145 (227)
Q Consensus        69 ~~~~L~~--~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~-~~~~L~~LpGVG~ktA~~il  145 (227)
                      ....++.  ...++.++..++.+++..+   -||.+.++.++...-..    +. +.|. ..=..+.+||||+++|..++
T Consensus        27 ~i~~~~~~~~i~~~~d~~~L~~~~~~~l---~~~~~~r~e~~~~ai~~----~r-~~~~~~~l~algI~giG~~~ak~L~   98 (116)
T 1dgs_A           27 LIERLLEKGLVRDVADLYHLRKEDLLGL---ERMGEKSAQNLLRQIEE----SK-HRGLERLLYALGLPGVGEVLARNLA   98 (116)
T ss_dssp             HHHHHHHTTSCSSGGGGGGGCCHHHHTT---SSCCSTTHHHHHHHHHH----GG-GCCHHHHHHHTTCSSCCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHCCHHHHHCC---CCCCHHHHHHHHHHHHH----HC-CCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             9999997688688799871899998346---68257899999999998----62-7999999997699754568999998


Q ss_pred             HH
Q ss_conf             98
Q gi|254780383|r  146 SM  147 (227)
Q Consensus       146 ~~  147 (227)
                      .+
T Consensus        99 ~~  100 (116)
T 1dgs_A           99 RR  100 (116)
T ss_dssp             HT
T ss_pred             HH
T ss_conf             76


No 66 
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261)
Probab=64.94  E-value=2.3  Score=22.63  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             456777643235888899998
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSM  147 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~  147 (227)
                      -+.+-.+||||+|||-.++.-
T Consensus        21 sD~ipGV~GIG~ktA~~Li~~   41 (80)
T 1exn_A           21 GDNIRGVEGIGAKRGYNIIRE   41 (80)
T ss_dssp             GGTBCCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHH
T ss_conf             136899997679999999999


No 67 
>>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} (A:219-300)
Probab=60.49  E-value=3.2  Score=21.71  Aligned_cols=18  Identities=28%  Similarity=0.340  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             777643235888899998
Q gi|254780383|r  130 LTRLPGIGRKGANVILSM  147 (227)
Q Consensus       130 L~~LpGVG~ktA~~il~~  147 (227)
                      +-.+||||+|||-.++.-
T Consensus        18 i~GV~GiG~ktA~~li~~   35 (82)
T 2izo_A           18 PDGIRGIGPERALKIIKK   35 (82)
T ss_dssp             TTCSTTCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             334799448899999998


No 68 
>>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (B:229-310)
Probab=59.91  E-value=6.5  Score=19.67  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4567776432358888999987
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      .-.|.++.|||+++|+.|+..+
T Consensus        28 ~~aLt~i~GIG~~~A~~I~~~~   49 (82)
T 2zbk_B           28 EFLVNEFQSIGDTTADKILELA   49 (82)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHT
T ss_pred             HHHHCCCCCCCHHHHHHHHHHH
T ss_conf             4551576467608777666552


No 69 
>>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} (A:271-340)
Probab=59.87  E-value=6.2  Score=19.79  Aligned_cols=17  Identities=18%  Similarity=0.565  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             77764323588889999
Q gi|254780383|r  130 LTRLPGIGRKGANVILS  146 (227)
Q Consensus       130 L~~LpGVG~ktA~~il~  146 (227)
                      +..+||||++|+.-.-.
T Consensus        14 i~~i~GIG~~~~~~L~~   30 (70)
T 1t94_A           14 IRKVSGIGKVTEKMLKA   30 (70)
T ss_dssp             GGGCTTSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHH
T ss_conf             14025763110045454


No 70 
>>3i1m_M 30S ribosomal protein S13; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M 2qal_M* 1p6g_M 1p87_M 2aw7_M 2avy_M 2i2u_M 2i2p_M* 2qan_M* 2qb9_M* 2qbb_M* 2qbd_M ... (M:1-63)
Probab=58.64  E-value=4.6  Score=20.67  Aligned_cols=20  Identities=30%  Similarity=0.581  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             45677764323588889999
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~  146 (227)
                      .-.|.++.|||+.+|..|+.
T Consensus        16 ~~aLt~i~GIG~~~A~~Ic~   35 (63)
T 3i1m_M           16 VIALTSIYGVGKTRSKAILA   35 (63)
T ss_dssp             HHHGGGSTTCCHHHHHHHHT
T ss_pred             EEEEECEECCCHHHHHHHHH
T ss_conf             88753445738999999999


No 71 
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:212-288)
Probab=58.48  E-value=3.6  Score=21.34  Aligned_cols=47  Identities=23%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999730037999999752355444200100001456777643235888899998754
Q gi|254780383|r   91 LQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFG  150 (227)
Q Consensus        91 l~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~  150 (227)
                      |+++....|+.+   ..++.++-..=..|+         +-.+||||+|||-.++.. ||
T Consensus         1 l~~i~~~~g~~~---~q~id~~~L~G~d~n---------i~GV~GiG~ktA~kli~~-~g   47 (77)
T 1b43_A            1 LEEVLKELKLTR---EKLIELAILVGTDYN---------PGGIKGIGLKKALEIVRH-SK   47 (77)
T ss_dssp             HHHHHHHHTCCH---HHHHHHHHHHCCTTS---------TTCSTTCCHHHHHHHHHT-CS
T ss_pred             HHHHHHHCCCCH---HHHHHHHHHCCCCCC---------CCCCCCCCHHHHHHHHHH-HC
T ss_conf             898566329789---999999997286656---------565896249999999999-59


No 72 
>>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} (B:)
Probab=58.45  E-value=4.6  Score=20.64  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             973003799999975235544420010000145677764323588889999
Q gi|254780383|r   96 RTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus        96 r~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~  146 (227)
                      ..+++. +|+.+..+-+.+.  ..+.-+-.+.++|++++|+|+|+.+-|..
T Consensus        19 ~~L~Ls-~R~~n~L~~~gI~--tv~dL~~~s~~dLl~i~nlG~ksl~EI~~   66 (79)
T 3gfk_B           19 EELDLS-VRSYNCLKRAGIN--TVQELANKTEEDMMKVRNLGRKSLEEVKA   66 (79)
T ss_dssp             GGSCCB-HHHHHHHHHTTCC--BHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred             HHHCCC-HHHHHHHHHCCCC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             984688-9999999891896--79999878999998578986736999999


No 73 
>>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} (A:221-288)
Probab=57.93  E-value=3.7  Score=21.28  Aligned_cols=18  Identities=22%  Similarity=0.230  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             777643235888899998
Q gi|254780383|r  130 LTRLPGIGRKGANVILSM  147 (227)
Q Consensus       130 L~~LpGVG~ktA~~il~~  147 (227)
                      +-.+||||+|||--++..
T Consensus        17 ~pGV~GIG~ktA~~li~~   34 (68)
T 1rxw_A           17 NEGVKGVGVKKALNYIKT   34 (68)
T ss_dssp             BCCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             589999578999999999


No 74 
>>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M (m:1-88)
Probab=57.60  E-value=4.9  Score=20.45  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             45677764323588889999
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~  146 (227)
                      .-.|.++.|||+.+|..|+.
T Consensus        27 ~~ALt~I~GIG~~~A~~Ic~   46 (88)
T 2zkq_m           27 AFAITAIKGVGRRYAHVVLR   46 (88)
T ss_dssp             HHHGGGSTTCCHHHHHHHHH
T ss_pred             EEEHHCCCCCCHHHHHHHHH
T ss_conf             36030246628999999999


No 75 
>>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:143-207)
Probab=57.43  E-value=5.7  Score=20.03  Aligned_cols=31  Identities=29%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             HCCCHHHHHHHHHHHHCCC--------CHHHHHHHHHHC
Q ss_conf             0121046787765654078--------889999999621
Q gi|254780383|r  155 GVDTHIFRISNRIGLAPGK--------TPNKVEQSLLRI  185 (227)
Q Consensus       155 ~VDthv~Rv~~Rlgl~~~~--------~~~~~~~~l~~~  185 (227)
                      .+|-||.|.+.++|+.++.        .+.+.|..+.++
T Consensus         2 ILDrHILr~l~~~g~i~e~~pk~~t~k~Yle~E~~l~~~   40 (65)
T 3fhg_A            2 IIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSI   40 (65)
T ss_dssp             CCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             068899999999088689997731399999999999877


No 76 
>>1lb2_B DNA-directed RNA polymerase alpha chain; protein-DNA complex, gene-regulatory, gene regulation/DNA complex; HET: CMP; 3.10A {Escherichia coli} (B:)
Probab=57.08  E-value=5.9  Score=19.96  Aligned_cols=46  Identities=20%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3003799999975235544420010000145677764323588889999
Q gi|254780383|r   98 IGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus        98 ~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~  146 (227)
                      +++. +|+.+..+-+.+-  ..+.-+-.+.++|++++|+|+|+.+-|.-
T Consensus        15 L~Ls-~R~~n~L~~agI~--ti~dL~~~s~~dLl~i~n~G~kSl~EI~~   60 (84)
T 1lb2_B           15 LELT-VRSANCLKAEAIH--YIGDLVQRTEVELLKTPNLGKKSLTEIKD   60 (84)
T ss_dssp             GCCC-HHHHHHHHHTTCC--BHHHHHTCCHHHHHHSTTCCHHHHHHHHH
T ss_pred             HCCC-HHHHHHHHHHCCC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             0788-9999999891894--69998728999997488987889999999


No 77 
>>1szp_A DNA repair protein RAD51; homologous recombination, asymmetry, RAD51 filament, DNA binding protein; HET: DNA; 3.25A {Saccharomyces cerevisiae} (A:26-81)
Probab=56.86  E-value=4.8  Score=20.53  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6200010126899999999730037999999752355444
Q gi|254780383|r   78 DTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILIN  117 (227)
Q Consensus        78 pt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~  117 (227)
                      .|.++++.++..+|.++   -|+...||..|++.|+.++.
T Consensus         1 ~Tve~ia~at~k~L~~i---kGisE~ka~KIi~aA~kl~~   37 (56)
T 1szp_A            1 HTAEAVAYAPRKDLLEI---KGISEAKADKLLNEAARLVP   37 (56)
T ss_dssp             CSHHHHHHSCSHHHHTS---TTCCHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHCCCHHHHHHH---HCCCHHHHHHHHHHHHHHHC
T ss_conf             63999973899999876---39999999999999998744


No 78 
>>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} (A:)
Probab=49.97  E-value=7  Score=19.45  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             145677764323588889999875421000121046787765654
Q gi|254780383|r  126 TLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLA  170 (227)
Q Consensus       126 ~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~  170 (227)
                      .+..|..|||||+++|..|+-.--+.|.--++    -+..|.++.
T Consensus       130 i~~~L~~I~GiG~~~a~~Iie~Re~g~F~S~e----Dl~~Rv~~~  170 (205)
T 2i5h_A          130 RMHQLELLPGVGKKMMWAIIEERKKRPFESFE----DIAQRVKGI  170 (205)
T ss_dssp             SSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHH----HHHHHSTTC
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHH----HHHHHHCCC
T ss_conf             78988744451589999999997548988999----999885467


No 79 
>>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} (A:183-237)
Probab=48.98  E-value=8.1  Score=19.00  Aligned_cols=33  Identities=27%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             62000101268999999997300379999997523554
Q gi|254780383|r   78 DTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHIL  115 (227)
Q Consensus        78 pt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i  115 (227)
                      -|.++|++++++.|.+.+-     ...+.+|+++|+-+
T Consensus        18 ~ti~dl~~~~~~~L~~~~G-----~~~g~~l~~~a~Gi   50 (55)
T 1jx4_A           18 NKLVDTLSIEFDKLKGXIG-----EAKAKYLISLARDE   50 (55)
T ss_dssp             CBGGGGGSSCHHHHHHHHC-----HHHHHHHHHHHTTC
T ss_pred             CCCHHCCCCCHHHHHHHHC-----CHHHHHHHHHHCCC
T ss_conf             6823121379999998968-----07789999985898


No 80 
>>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A (A:)
Probab=48.73  E-value=6.8  Score=19.53  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             45677764323588889999875421000121046787765
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRI  167 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rl  167 (227)
                      ...|..|||||+.|+...-..+...+.=...........|+
T Consensus         3 ~~~l~~LPNiG~~~e~~L~~iGI~tv~~L~~~ga~~~~~~l   43 (93)
T 3bqs_A            3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRI   43 (93)
T ss_dssp             CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHH
T ss_conf             57785689999999999998399989999877999999999


No 81 
>>1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=48.09  E-value=18  Score=16.72  Aligned_cols=106  Identities=15%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHC---------CCCCHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             996333203567998998731---------76200010126899999999730037-99999975235544420010000
Q gi|254780383|r   56 LLSAQSTDVNVNKATKHLFEI---------ADTPQKMLAIGEKKLQNYIRTIGIYR-KKSENIISLSHILINEFDNKIPQ  125 (227)
Q Consensus        56 iLs~qT~d~~v~~~~~~L~~~---------ypt~e~l~~a~~~el~~~ir~~G~~~-~KAk~I~~~a~~i~~~~~g~vP~  125 (227)
                      |+.+-|+.+...++.+.+-..         |..| ...+++ +|..+.++..|.-- .-.--+-.+-+.|..+|||.-|.
T Consensus        55 iVVASssG~TA~k~~e~~~~~iVvVTh~~GF~~p-g~~e~~-~e~~~~L~~~Gv~V~t~TH~lSg~eR~is~kfgG~~p~  132 (206)
T 1t57_A           55 FVVASVSGETALRLSEXVEGNIVSVTHHAGFREK-GQLELE-DEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPV  132 (206)
T ss_dssp             EEEECSSSHHHHHHHTTCCSEEEEECCCTTSSST-TCCSSC-HHHHHHHHHHTCEEECCSCTTTTHHHHHHHHHCSCCHH
T ss_pred             EEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCC-HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCHH
T ss_conf             9998078679999998638979999465787899-966469-99999999769889995130344155522322798989


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             1-4567776432358888999987542100012104678
Q gi|254780383|r  126 T-LEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRI  163 (227)
Q Consensus       126 ~-~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv  163 (227)
                      . +.+-+++=|.|-|.|--|-+.+.+.-.+++|.-|.=+
T Consensus       133 EiIA~tLR~fgqG~KVavEi~iMAaDaGlIp~~eeVIAi  171 (206)
T 1t57_A          133 EIXAETLRXVSQGFKVCVEIAIXAADAGLIPVDEEVIAI  171 (206)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTSSCSSSCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEEEE
T ss_conf             999999997378757999999986067877789849997


No 82 
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:1-149)
Probab=47.37  E-value=3.8  Score=21.20  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCH
Q ss_conf             689999999973003799999975235544420010000----14567776432358888999987542---10001210
Q gi|254780383|r   87 GEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQ----TLEGLTRLPGIGRKGANVILSMAFGI---PTIGVDTH  159 (227)
Q Consensus        87 ~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~----~~~~L~~LpGVG~ktA~~il~~~~~~---p~~~VDth  159 (227)
                      ...++...+.+.|+....       +..|.+.||.....    +-=.|..++|||=++||.|... +|.   .-.=+..-
T Consensus         6 ~~~~~~~~L~~~Gi~~~~-------a~ki~~~yg~~a~~~i~~nPY~L~~i~gigF~~aD~iA~~-~gi~~dd~~Ri~a~   77 (149)
T 3e1s_A            6 LERRLLAGLQGLGLTINQ-------AQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQA-RGGALDDPRRLTAA   77 (149)
T ss_dssp             ---------------------------------------------CGGGTSSSCCHHHHHTTC--------CCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH-CCCCCCCHHHHHHH
T ss_conf             999999999877999999-------9999999849999999949935541589995999999997-69898999999999


Q ss_pred             HHHHHHHHHHHCCCC---HHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             467877656540788---89999999621--8842267899999999665164
Q gi|254780383|r  160 IFRISNRIGLAPGKT---PNKVEQSLLRI--IPPKHQYNAHYWLVLHGRYVCK  207 (227)
Q Consensus       160 v~Rv~~Rlgl~~~~~---~~~~~~~l~~~--~p~~~~~~~~~~li~~G~~iC~  207 (227)
                      +.-+++......+.+   .+.......++  ++.+.....-..++..|+.+..
T Consensus        78 i~~~L~~~~~~~Ght~l~~~~L~~~~~~lL~~~~~~i~~~l~~l~~~~~iv~~  130 (149)
T 3e1s_A           78 AVYALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSED  130 (149)
T ss_dssp             HHHHHHHHHHHTCCSCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTSSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999997334898721499999999998679967899999999885246654


No 83 
>>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc, core protein, RNA-binding, icosaderal virus; 3.80A {Rotavirus A} (A:1-37,A:228-511)
Probab=47.32  E-value=10  Score=18.40  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=28.7

Q ss_pred             CCHHHHHHHHHHHHCCCH-HHHHHHHHH------HHHCCCC----CHHHCCCCHHHHHHHHHHH
Q ss_conf             868999999999633320-356799899------8731762----0001012689999999973
Q gi|254780383|r   46 VNHFTLIVAVLLSAQSTD-VNVNKATKH------LFEIADT----PQKMLAIGEKKLQNYIRTI   98 (227)
Q Consensus        46 ~~p~~~LVa~iLs~qT~d-~~v~~~~~~------L~~~ypt----~e~l~~a~~~el~~~ir~~   98 (227)
                      .|.|+.+|+++|||||-. +-|-.-+-.      |+..-|+    -|++...-..-+..+|.|+
T Consensus       106 ndaFK~iI~~~LsqRT~s~~FvTsnymSL~S~M~LmtivP~~mFiResLvA~QLAiiNTiiYPa  169 (321)
T 3gzu_A          106 NDCFKTLIAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIVNTIIYPA  169 (321)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCSSCHHHHHHHHHHHHSSCGGGBCHHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7899999999986313578864234276886515320263678888889999999988766332


No 84 
>>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} (B:)
Probab=46.65  E-value=9.2  Score=18.64  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9973003799999975235544420010000145677764323588889999
Q gi|254780383|r   95 IRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus        95 ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~  146 (227)
                      |..+++. +||.+...-+.+-  ..+.-+-.+.++|++++|+|+|+..-|.-
T Consensus        11 I~~L~Ls-~R~~N~L~~~gI~--ti~dL~~~s~~dLl~i~n~G~kSl~EI~~   59 (73)
T 1z3e_B           11 IEELDLS-VRSYNCLKRAGIN--TVQELANKTEEDMMKVRNLGRKSLEEVKA   59 (73)
T ss_dssp             GGGSCCB-HHHHHHHHHTTCC--BHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred             HHHHCCC-HHHHHHHHHCCCC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             9883588-9999999883894--79999877999997588976605999999


No 85 
>>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (M:1-64)
Probab=46.50  E-value=5.5  Score=20.14  Aligned_cols=20  Identities=35%  Similarity=0.371  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             45677764323588889999
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~  146 (227)
                      .-.|.++.|||+.+|..|+.
T Consensus        16 ~~aLt~I~GIG~~~A~~Ic~   35 (64)
T 2vqe_M           16 DVALTYIYGIGKARAKEALE   35 (64)
T ss_dssp             HHHHTTSSSCCSHHHHHHTT
T ss_pred             EEEEEEEECCCHHHHHHHHH
T ss_conf             88733065818999999999


No 86 
>>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=45.21  E-value=8.8  Score=18.77  Aligned_cols=21  Identities=14%  Similarity=0.146  Sum_probs=17.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             000014567776432358888
Q gi|254780383|r  122 KIPQTLEGLTRLPGIGRKGAN  142 (227)
Q Consensus       122 ~vP~~~~~L~~LpGVG~ktA~  142 (227)
                      ..|.+.++|.+++|||.+-+.
T Consensus        42 ~~P~t~~eL~~i~G~~~~k~~   62 (81)
T 1d8b_A           42 ILPMNDSAFATLGTVEDKYRR   62 (81)
T ss_dssp             HCCCSHHHHGGGSCCCHHHHH
T ss_pred             HCCCCHHHHHCCCCCCHHHHH
T ss_conf             789999998179999999999


No 87 
>>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} (X:1-14,X:218-292)
Probab=43.16  E-value=5.5  Score=20.16  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             777643235888899998754210001210467877656
Q gi|254780383|r  130 LTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIG  168 (227)
Q Consensus       130 L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlg  168 (227)
                      +-.+||||+|||-.++.- |+        ++..|+..+.
T Consensus        31 ~pGV~GIG~KtA~kLI~~-yg--------sle~ii~~l~   60 (89)
T 1ul1_X           31 CESIRGIGPKRAVDLIQK-HK--------SIEEIVRRLD   60 (89)
T ss_dssp             SCCCTTCCHHHHHHHHHH-SS--------SHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHH-CC--------CHHHHHHHHH
T ss_conf             355788569999999998-09--------9999999998


No 88 
>>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* (A:240-306)
Probab=42.64  E-value=10  Score=18.31  Aligned_cols=18  Identities=33%  Similarity=0.565  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             777643235888899998
Q gi|254780383|r  130 LTRLPGIGRKGANVILSM  147 (227)
Q Consensus       130 L~~LpGVG~ktA~~il~~  147 (227)
                      +.+|||||++|+.-+-..
T Consensus         4 i~~i~GVG~~t~~kL~~~   21 (67)
T 2aq4_A            4 LDDLPGVGHSTLSRLEST   21 (67)
T ss_dssp             GGGSTTCCHHHHHHHHHH
T ss_pred             CCCHHCCCHHHHHHHHHH
T ss_conf             230120278999999987


No 89 
>>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} (A:)
Probab=38.31  E-value=27  Score=15.52  Aligned_cols=63  Identities=10%  Similarity=0.006  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             999997523554442001000----014567776432358---888999987542100012104678776
Q gi|254780383|r  104 KSENIISLSHILINEFDNKIP----QTLEGLTRLPGIGRK---GANVILSMAFGIPTIGVDTHIFRISNR  166 (227)
Q Consensus       104 KAk~I~~~a~~i~~~~~g~vP----~~~~~L~~LpGVG~k---tA~~il~~~~~~p~~~VDthv~Rv~~R  166 (227)
                      |.+.|.+-.+.|..+..+.-.    -.+..|-+|.+-...   .|..-|++.|.+..--||||..=+==|
T Consensus       124 ~~~~L~egi~~i~~~~~~~~~~~~~~~~s~l~~l~s~d~~~~~~~~y~Ll~Clr~D~~KV~tyLk~LkCR  193 (199)
T 1f6f_A          124 KAKVLVDGVEVIQKRIHPGEKNEPYPVWSEQSSLTSQDENVRRVAFYRLFHCLHRDSSKIYTYLRILKCR  193 (199)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCCCCCCCCGGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999982765335788775543113588588898850765776604158999999999545


No 90 
>>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} (A:)
Probab=38.30  E-value=13  Score=17.54  Aligned_cols=39  Identities=10%  Similarity=0.031  Sum_probs=30.1

Q ss_pred             HHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99899873176200010126899999999730037999999752
Q gi|254780383|r   68 KATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISL  111 (227)
Q Consensus        68 ~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~  111 (227)
                      .-++.|...||+|-.=.    ++|.++||.+. ...|+.++..+
T Consensus        36 ~n~p~lK~efP~W~~R~----KQI~KlWR~ls-se~r~py~qkA   74 (90)
T 2yuk_A           36 INFPNLKEEFPDWTTRV----KQIAKLWRKAS-SQERAPYVQKA   74 (90)
T ss_dssp             HHCTTHHHHCCSHHHHH----HHHHHHHHHSC-HHHHHHHHHHH
T ss_pred             CCCHHHHHHCCCHHHHH----HHHHHHHHHCC-HHHHCHHHHHH
T ss_conf             47778887785658999----99999998577-76404499998


No 91 
>>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} (A:237-300)
Probab=36.88  E-value=28  Score=15.38  Aligned_cols=41  Identities=22%  Similarity=0.463  Sum_probs=29.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHH
Q ss_conf             787765654078889999999621884226789999999-9665
Q gi|254780383|r  162 RISNRIGLAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVL-HGRY  204 (227)
Q Consensus       162 Rv~~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~~~li~-~G~~  204 (227)
                      +++.-+|+ ++.+++++++.|-+ +|.+...+.|.-+++ +|=.
T Consensus        15 ~fl~~lGI-nsTDpeeIH~~LI~-~P~ekl~eAn~~l~~~~Glt   56 (64)
T 2fj0_A           15 LFVTNIGI-TATDPEEIHQKLIE-MPAEKLNEANRFLLEQFGLT   56 (64)
T ss_dssp             HHHHHTTC-CCCSHHHHHHHHHT-SCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHCCC-CCCHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCC
T ss_conf             99984276-42027889998862-88999999999876531663


No 92 
>>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:155-202)
Probab=36.31  E-value=23  Score=15.99  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             1210467877656540788899999996218842267899
Q gi|254780383|r  156 VDTHIFRISNRIGLAPGKTPNKVEQSLLRIIPPKHQYNAH  195 (227)
Q Consensus       156 VDthv~Rv~~Rlgl~~~~~~~~~~~~l~~~~p~~~~~~~~  195 (227)
                      |.|++.-++.|+.=.+....+++-+++++++|++.....-
T Consensus         1 vetyien~mrr~seenrqi~ekifkdie~ilpp~yar~ik   40 (48)
T 2p4w_A            1 IETYIENTMRRLAEENRQIIEEIFRDIEKILPPGYARSLK   40 (48)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999988999987503889999999878753522318999


No 93 
>>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} (A:1-37,A:151-214)
Probab=36.29  E-value=25  Score=15.68  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=26.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCC--C-----CHHHHHHHHHHC
Q ss_conf             7542100012104678776565407--8-----889999999621
Q gi|254780383|r  148 AFGIPTIGVDTHIFRISNRIGLAPG--K-----TPNKVEQSLLRI  185 (227)
Q Consensus       148 ~~~~p~~~VDthv~Rv~~Rlgl~~~--~-----~~~~~~~~l~~~  185 (227)
                      -|..--..+|-||.|.+.++|+.+.  +     .+.+.|..+.++
T Consensus        32 ~~~~~~AILDRHILR~L~~~Gii~EipKtlTkk~YLelE~~l~ei   76 (101)
T 3fhf_A           32 EFKSFKAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDI   76 (101)
T ss_dssp             HHHGGGCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             716567776279999999848866777633387899999999987


No 94 
>>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A (A:459-564)
Probab=35.93  E-value=29  Score=15.28  Aligned_cols=72  Identities=10%  Similarity=0.050  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC----CCHHHCCCCHHHHHHHHHH
Q ss_conf             899999999999976799987777868999999999633320356799899873176----2000101268999999997
Q gi|254780383|r   22 PKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIAD----TPQKMLAIGEKKLQNYIRT   97 (227)
Q Consensus        22 ~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~yp----t~e~l~~a~~~el~~~ir~   97 (227)
                      ++++......+++.|..-..+...+.-.+.   .+-  +.-...|.++|.+++.+|+    +++....-++++|+..|..
T Consensus        29 Kerf~~Fn~~fee~~~~q~~w~VpD~~LR~---~Lr--~~i~~~VvpaY~~Fl~r~~~~~k~~~kyikytpe~le~~l~~  103 (106)
T 2b1e_A           29 KEKFRKFNEGFEDLVSKTKQYKLSDPSLKV---TLK--SEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQ  103 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCHHHHH---HHH--HHHHHHHHHHHHHHHHHHGGGSSSGGGTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHH---HHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf             999999999999999982861286899999---999--999999999999999984645789875461389999999998


Q ss_pred             H
Q ss_conf             3
Q gi|254780383|r   98 I   98 (227)
Q Consensus        98 ~   98 (227)
                      +
T Consensus       104 L  104 (106)
T 2b1e_A          104 L  104 (106)
T ss_dssp             H
T ss_pred             H
T ss_conf             6


No 95 
>>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:1-28,A:102-142)
Probab=33.97  E-value=31  Score=15.07  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0145677764323588889999
Q gi|254780383|r  125 QTLEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus       125 ~~~~~L~~LpGVG~ktA~~il~  146 (227)
                      ..+++|..+.|+|-|-|+-.|-
T Consensus        41 eaRe~LvniKGiGyKEASHFLR   62 (69)
T 3fhg_A           41 LARERLLNIKGIGMQEASHFLR   62 (69)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999675853999999999


No 96 
>>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase, nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans R1} (A:)
Probab=33.21  E-value=15  Score=17.26  Aligned_cols=21  Identities=38%  Similarity=0.773  Sum_probs=17.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             000014567776432358888
Q gi|254780383|r  122 KIPQTLEGLTRLPGIGRKGAN  142 (227)
Q Consensus       122 ~vP~~~~~L~~LpGVG~ktA~  142 (227)
                      ..|.+.++|.+++|||+.-..
T Consensus        41 ~~P~t~~eL~~i~gi~~~~~~   61 (77)
T 2rhf_A           41 RQPRTLAELAEVPGLGEKRIE   61 (77)
T ss_dssp             HCCCSHHHHTTSTTTCHHHHH
T ss_pred             CCCCCHHHHCCCCCCCHHHHH
T ss_conf             093499997379998999999


No 97 
>>2pft_A Exocytosis protein; helix-turn-helix, endocytosis/exocytosis complex; 2.25A {Mus musculus} (A:470-571)
Probab=32.93  E-value=32  Score=14.96  Aligned_cols=72  Identities=8%  Similarity=-0.025  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCHHHCCCCHHHHHHHH
Q ss_conf             899999999999976799987777868999999999633320356799899873176------20001012689999999
Q gi|254780383|r   22 PKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIAD------TPQKMLAIGEKKLQNYI   95 (227)
Q Consensus        22 ~~~~~~I~~~L~~~yp~~~~~l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~yp------t~e~l~~a~~~el~~~i   95 (227)
                      ++++......+++.|..-..|...+.-.+.-+.     +.-...|.++|..++.+|.      +++....-++++|+..|
T Consensus        20 Kerf~~Fn~~Fee~~~~q~~w~VpD~~LR~~Lr-----~~i~~~Vip~Y~~F~~ry~~~~~~k~~~Kyikytpe~le~~l   94 (102)
T 2pft_A           20 KERFKGFNDGLEELCKIQKVWAIPDTEQRDKIR-----QAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMI   94 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHH
T ss_conf             999999999999999973970595899999999-----999999999999999983776556897551047899999999


Q ss_pred             HHH
Q ss_conf             973
Q gi|254780383|r   96 RTI   98 (227)
Q Consensus        96 r~~   98 (227)
                      ..+
T Consensus        95 ~~L   97 (102)
T 2pft_A           95 DRL   97 (102)
T ss_dssp             HTS
T ss_pred             HHH
T ss_conf             998


No 98 
>>1huw_A Human growth hormone; 2.00A {Homo sapiens} (A:)
Probab=32.01  E-value=33  Score=14.86  Aligned_cols=105  Identities=12%  Similarity=-0.026  Sum_probs=50.9

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-----CCH--HHHHHH
Q ss_conf             33320356799899873176200010126899999999730037999999752355444200-1-----000--014567
Q gi|254780383|r   59 AQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFD-N-----KIP--QTLEGL  130 (227)
Q Consensus        59 ~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~-g-----~vP--~~~~~L  130 (227)
                      ||+.++.-.+..-.|..-|.+|-.........-..++...-.-..|-+.|.+-.+.|..+-. |     ..|  .....|
T Consensus        68 qq~s~~~LL~~~l~ll~sW~~PL~~L~~~~~~~~~i~s~a~~I~~kl~~L~egi~~l~~~~~~~~~~~~~~~~w~~l~~l  147 (191)
T 1huw_A           68 QQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFD  147 (191)
T ss_dssp             HTSCHHHHHHHHHHHHHTTTTGGGGGHHHHHHCCSTTTTTCCHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf             65312589999999999987199999999864011156634099999989999999975502699871278998885406


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             776432358888999987542100012104678
Q gi|254780383|r  131 TRLPGIGRKGANVILSMAFGIPTIGVDTHIFRI  163 (227)
Q Consensus       131 ~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv  163 (227)
                      .+...-.+-.|..-|++.|.+..--||+|..=+
T Consensus       148 ~s~~~~~~~~~~y~Ll~Clr~D~~Kv~tyLkvL  180 (191)
T 1huw_A          148 TNSHNDDALLKNYGLLYCFNKDMSKVSTYLRTV  180 (191)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHE
T ss_conf             777670889873775567445378898887640


No 99 
>>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12} (A:)
Probab=31.37  E-value=11  Score=18.03  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9973003799999975235544420010000145677764323588889999
Q gi|254780383|r   95 IRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILS  146 (227)
Q Consensus        95 ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~  146 (227)
                      |.-+++. +||.+..+-+.+-  ..+.-+-.+.++|++++|+|+|+..-|--
T Consensus        26 I~~L~Ls-~Rs~N~Lk~~gI~--ti~dL~~~s~~dLl~i~n~G~kSl~Ei~~   74 (98)
T 1coo_A           26 VDDLELT-VRSANCLKAEAIH--YIGDLVQRTEVELLKTPNLGKKSLTEIKD   74 (98)
T ss_dssp             GGGGTCC-TTTHHHHHTTTCC--BHHHHHTSCHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHCCC-HHHHHHHHHCCCC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             9982688-9999899993997--59999858999998677987878999999


No 100
>>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B (B:242-341)
Probab=28.55  E-value=17  Score=16.89  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=16.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             963332035679989987317620001012
Q gi|254780383|r   57 LSAQSTDVNVNKATKHLFEIADTPQKMLAI   86 (227)
Q Consensus        57 Ls~qT~d~~v~~~~~~L~~~ypt~e~l~~a   86 (227)
                      +++|...-...+| ....++||||.+|.++
T Consensus        15 ~L~qI~gvs~~kA-~aI~~~YPTp~~L~~a   43 (100)
T 2ziu_B           15 QIQQLNRVSLEMA-SAVVNAYPSPQLLVQA   43 (100)
T ss_dssp             HHTTSTTCCHHHH-HHHHHHSCSHHHHHHH
T ss_pred             HHHHCCCCCHHHH-HHHHHHCCCHHHHHHH
T ss_conf             9986579999999-9999978999999999


No 101
>>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (A:1-47,A:173-315)
Probab=27.62  E-value=35  Score=14.72  Aligned_cols=49  Identities=18%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9997300379999997523554442001000014567776432358888999
Q gi|254780383|r   94 YIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVIL  145 (227)
Q Consensus        94 ~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il  145 (227)
                      -|.-+++. +|+.+..+-+.+-  .-+.-+-.+.++|++++|+|.|+.+-|.
T Consensus       130 ~IeeL~Ls-~R~~n~Lk~a~I~--ti~dL~~~s~~dL~~i~n~G~ksl~EI~  178 (190)
T 2a6h_A          130 PLEELGLS-TRVLHSLKEEGIE--SVRALLALNLKDLKNIPGIGERSLEEIK  178 (190)
T ss_dssp             ----------------------------------------------------
T ss_pred             CHHHHCCC-HHHHHHHHHCCCC--CHHHHHHCCHHHHHCCCCCCCCCHHHHH
T ss_conf             59990587-8888678775894--7999884999998459997605599999


No 102
>>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein,; NMR {Branchiostoma lanceolatum} (A:)
Probab=27.48  E-value=36  Score=14.68  Aligned_cols=59  Identities=7%  Similarity=0.025  Sum_probs=35.6

Q ss_pred             HHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             89987317620001012689999999973003799999975235544420010000145677
Q gi|254780383|r   70 TKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLT  131 (227)
Q Consensus        70 ~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~  131 (227)
                      +..+|+.| +...=-..+.+|+..+++.+|+.......+..+.+.+-...+|.|  ++++.+
T Consensus        10 l~~~F~~~-D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~D~d~dg~I--~~~EF~   68 (81)
T 1c7v_A           10 ILRAFKVF-DANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVI--DIPEFM   68 (81)
T ss_dssp             HHHHHHHH-SCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSE--EHHHHH
T ss_pred             HHHHHHHH-CCCCCCEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCE--EHHHHH
T ss_conf             99999988-589749074999999999838887879999999998789989949--299999


No 103
>>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} (A:33-116,A:172-217)
Probab=26.78  E-value=41  Score=14.27  Aligned_cols=74  Identities=12%  Similarity=0.209  Sum_probs=49.7

Q ss_pred             CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHC
Q ss_conf             2000101268999999997300379999997523554442001000014567776432358888999987542--10001
Q gi|254780383|r   79 TPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI--PTIGV  156 (227)
Q Consensus        79 t~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~--p~~~V  156 (227)
                      ++.++..++.++|+.+|...|=-.     |+    .-+++|-++    ..+...      -.|..+.+.-.|+  .++.+
T Consensus         3 NIDAIkyL~~edie~LI~~fg~ee-----V~----~rieeyPr~----I~sp~D------fvArLl~amK~GK~aEvpv~   63 (130)
T 1l2l_A            3 NIDAIKYLKREDLEKRIEKVGKEE-----VL----RYSEELPKE----IETIPQ------LLGSILWSIKRGKAAELLVV   63 (130)
T ss_dssp             EEEEECBCCHHHHHHHHHHHCHHH-----HH----HHHHSCCSS----BCSHHH------HHHHHHHHHHHTCCEEEEBC
T ss_pred             CEEEEEECCHHHHHHHHHHCCCHH-----HH----HHHHCCCCC----CCCHHH------HHHHHHHHHHCCCCEEEEEC
T ss_conf             413799648899999998608413-----32----455439845----699999------99999998418952487615


Q ss_pred             CCHHHHHHHHHHHHC
Q ss_conf             210467877656540
Q gi|254780383|r  157 DTHIFRISNRIGLAP  171 (227)
Q Consensus       157 Dthv~Rv~~Rlgl~~  171 (227)
                      +.-|+..+++|||..
T Consensus        64 ~~ev~~w~~~~~~de   78 (130)
T 1l2l_A           64 SREVREYMRKWGWDE   78 (130)
T ss_dssp             CHHHHHHHHHHCCSE
T ss_pred             CHHHHHHHHHCCCCE
T ss_conf             878999998655525


No 104
>>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} (T:1-19,T:58-205)
Probab=26.36  E-value=8.7  Score=18.79  Aligned_cols=16  Identities=38%  Similarity=0.578  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             4567776432358888
Q gi|254780383|r  127 LEGLTRLPGIGRKGAN  142 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~  142 (227)
                      -+.+-.+||||++||.
T Consensus       152 ~D~~~GIpGiG~ktA~  167 (167)
T 1bgx_T          152 SDNLPGVKGIGEKTAR  167 (167)
T ss_dssp             SSCCCCCCCSSSCTTT
T ss_pred             CCCCCCCCCCCCCCHH
T ss_conf             0367778887742213


No 105
>>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} (A:)
Probab=25.53  E-value=25  Score=15.69  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=17.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0000145677764323588889
Q gi|254780383|r  122 KIPQTLEGLTRLPGIGRKGANV  143 (227)
Q Consensus       122 ~vP~~~~~L~~LpGVG~ktA~~  143 (227)
                      ..|.+.++|.+++|||..-+.-
T Consensus        49 ~~P~t~~eL~~i~g~~~~~~~~   70 (89)
T 1wud_A           49 QXPITASEXLSVNGVGXRKLER   70 (89)
T ss_dssp             HCCCSHHHHHTSTTCCHHHHHH
T ss_pred             HCCCCHHHHHCCCCCCHHHHHH
T ss_conf             7889999980799989999999


No 106
>>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} (A:)
Probab=25.49  E-value=11  Score=18.00  Aligned_cols=20  Identities=5%  Similarity=-0.059  Sum_probs=13.8

Q ss_pred             CHHCCCHHHHHHHHHHHHHH
Q ss_conf             00239989999999999997
Q gi|254780383|r   16 LGCLYTPKELEEIFYLFSLK   35 (227)
Q Consensus        16 ~~~~~~~~~~~~I~~~L~~~   35 (227)
                      .+...+.+...+|+..|.+.
T Consensus        20 ~~~~~~~~~k~~i~~~L~~~   39 (298)
T 2cw6_A           20 EKNIVSTPVKIKLIDMLSEA   39 (298)
T ss_dssp             CSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHH
T ss_conf             89998999999999999986


No 107
>>2ggm_A Centrin-2; EF-hand superfamily, DNA repair complex, cell cycle; 2.35A {Homo sapiens} (A:86-172)
Probab=25.08  E-value=44  Score=14.07  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=35.1

Q ss_pred             HHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             799899873176200010126899999999730037999999752355444200100001456777
Q gi|254780383|r   67 NKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTR  132 (227)
Q Consensus        67 ~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~  132 (227)
                      ...++..|+.| +.+.=-..+.+|+..+++..|..- -...+..+.+.+-..-+|.|  +++++..
T Consensus        18 ~~~~~~~F~~f-D~~~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~D~d~~G~I--~~~eF~~   79 (87)
T 2ggm_A           18 KEEILKAFKLF-DDDETGKISFKNLKRVAKELGENL-TDEELQEXIDEADRDGDGEV--SEQEFLR   79 (87)
T ss_dssp             HHHHHHHHHHH-CTTCCSSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHCSSSSSSB--CHHHHHH
T ss_pred             HHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCCCE--EHHHHHH
T ss_conf             99999999987-107789936999988898718978-69999999999688999979--7999999


No 108
>>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} (A:221-376)
Probab=24.80  E-value=44  Score=14.03  Aligned_cols=46  Identities=22%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             CCCHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             620001012-689999999973003799999975235544420010000145677764323
Q gi|254780383|r   78 DTPQKMLAI-GEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIG  137 (227)
Q Consensus        78 pt~e~l~~a-~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG  137 (227)
                      ++++++-+. +++|-.     .|||=         .+.++.+-+-.+-+++..|+++|+|-
T Consensus        41 ~n~~~VFDl~~~eEa~-----~~FYm---------lRNLIRRND~~l~DdiRfLLsIPsvk   87 (156)
T 2aja_A           41 SNPDGVFDLVTKSECL-----QGFYX---------LRNLIRRNDEVLLDDIRFLLSIPGIK   87 (156)
T ss_dssp             TSSSSCCCCSSHHHHH-----HHHHH---------HHHHHHHCCGGGHHHHHHHHTSTTTG
T ss_pred             CCHHHHHHHHHCCCCC-----CCCCC---------HHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             8999999998465421-----37763---------16999850578699999998646775


No 109
>>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=23.99  E-value=16  Score=17.06  Aligned_cols=28  Identities=7%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             7999999752355444200100001456
Q gi|254780383|r  102 RKKSENIISLSHILINEFDNKIPQTLEG  129 (227)
Q Consensus       102 ~~KAk~I~~~a~~i~~~~~g~vP~~~~~  129 (227)
                      +.+.+.|+.+|+.|+|+|...+-.|++.
T Consensus         3 ~ir~k~iKr~a~~lieky~~~~t~DF~~   30 (62)
T 1rq6_A            3 NIRTSFVKRIAKEMIETHPGKFTDDFDT   30 (62)
T ss_dssp             CCCCHHHHHHHHHHHTTSCCCCCCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHCHHHHCCCHHH
T ss_conf             8440699999999999864464568888


No 110
>>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} (A:29-113,A:169-215)
Probab=23.41  E-value=47  Score=13.86  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHC
Q ss_conf             2000101268999999997300379999997523554442001000014567776432358888999987542--10001
Q gi|254780383|r   79 TPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI--PTIGV  156 (227)
Q Consensus        79 t~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~--p~~~V  156 (227)
                      ++.++..++.++|+++|...|=-.    -+     .-+++|    |...++...+      .|..+-+...|+  .++..
T Consensus         4 NIDAIkyL~~edie~LI~~f~~~e----V~-----~rieey----Pr~I~sp~Df------vArLihsmk~GK~aEvpv~   64 (132)
T 1ua4_A            4 NIDAIKYLDSKDLEERIIKAGKEE----VI-----KYSEEL----PDKINTVSQL------LGSILWSIRRGKAAELFVE   64 (132)
T ss_dssp             EEEEEEECCHHHHHHHHHHHCHHH----HH-----HHHHSC----CSSBCSHHHH------HHHHHHHHHHTCCEEEEBC
T ss_pred             CEEEEEECCHHHHHHHHHHHCCHH----HH-----HHHHCC----CCCCCCHHHH------HHHHHHHHHCCCCEEEECC
T ss_conf             266899668999999998738154----43-----442238----6023999999------9999999746971477437


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             21046787765654
Q gi|254780383|r  157 DTHIFRISNRIGLA  170 (227)
Q Consensus       157 Dthv~Rv~~Rlgl~  170 (227)
                      |.-++.-+++|||.
T Consensus        65 ~eev~~wl~~~~~D   78 (132)
T 1ua4_A           65 SCPVRFYMKRWGWN   78 (132)
T ss_dssp             CHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHCCCC
T ss_conf             77799999855663


No 111
>>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A (A:230-311)
Probab=23.03  E-value=9.4  Score=18.57  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=13.4

Q ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             3332035679989987317620001012
Q gi|254780383|r   59 AQSTDVNVNKATKHLFEIADTPQKMLAI   86 (227)
Q Consensus        59 ~qT~d~~v~~~~~~L~~~ypt~e~l~~a   86 (227)
                      +|-..-...+| ...-++||||..|.+|
T Consensus        11 ~qi~gvs~~~A-~aI~~~yPTp~~L~~a   37 (82)
T 2ziu_A           11 MQISGVSGDKA-AAVLEHYSTVSSLLQA   37 (82)
T ss_dssp             TTBTTCCHHHH-HHHHHHCSSHHHHHHH
T ss_pred             HCCCCCCHHHH-HHHHHHCCCHHHHHHH
T ss_conf             80899999999-9999976999999999


No 112
>>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} (A:22-95)
Probab=22.24  E-value=37  Score=14.58  Aligned_cols=59  Identities=5%  Similarity=-0.026  Sum_probs=28.9

Q ss_pred             HHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9987317620001012689999999973003799999975235544420010000145677
Q gi|254780383|r   71 KHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLT  131 (227)
Q Consensus        71 ~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~  131 (227)
                      ..+|+.|-....=-..+.+|+..+++..|........+..+.+.+-..-+|.|  +++|..
T Consensus         7 ~~~f~~fd~~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~l~~~~D~d~dg~I--~f~EF~   65 (74)
T 1fpw_A            7 QQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFI--HFEEFI   65 (74)
T ss_dssp             HHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEE--CHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCE--EHHHHH
T ss_conf             99999996558999736999999999976899849999999999769996966--099999


No 113
>>3d48_P Prolactin, PRL; cytokine-cytokine receptor complex, four-helix bundle, glycoprotein, hormone, lactation, secreted, alternative splicing; 2.50A {Homo sapiens} PDB: 2q98_A 1n9d_A 1rw5_A 3ew3_A (P:)
Probab=21.12  E-value=52  Score=13.56  Aligned_cols=40  Identities=18%  Similarity=0.066  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             4567776432358888999987542100012104678776
Q gi|254780383|r  127 LEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNR  166 (227)
Q Consensus       127 ~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~R  166 (227)
                      ...|.+...-.+-.|..-|++.|.+..--||+|..=+==|
T Consensus       142 l~~l~s~~~~~~l~~~y~Ll~ClrrD~hKV~tyLkvLkCR  181 (188)
T 3d48_P          142 LPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCR  181 (188)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             4101467638999972712777625069999999998422


No 114
>>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/beta/alpha) sandwich; NMR {Escherichia coli CFT073} (A:)
Probab=20.89  E-value=48  Score=13.82  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=16.5

Q ss_pred             HHHCCCCHHHHHHHHHHHHHH
Q ss_conf             001012689999999973003
Q gi|254780383|r   81 QKMLAIGEKKLQNYIRTIGIY  101 (227)
Q Consensus        81 e~l~~a~~~el~~~ir~~G~~  101 (227)
                      ..|+.++.+++.+.|..-|||
T Consensus        63 kkLA~ad~~~V~~~L~~qGfy   83 (110)
T 2h7a_A           63 KKLVNADIEKVKQALTEQGYY   83 (110)
T ss_dssp             CCCSSSCHHHHHHHHHHTSEE
T ss_pred             CHHHCCCHHHHHHHHHHCCEE
T ss_conf             612119899999999868878


No 115
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:973-1041)
Probab=20.00  E-value=55  Score=13.41  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             432358888999987542100012104678776565
Q gi|254780383|r  134 PGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGL  169 (227)
Q Consensus       134 pGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl  169 (227)
                      ||||...|..|.-.--+.|.-    .+.-++.|.++
T Consensus         1 pGig~~~a~~Iv~~R~~g~F~----s~~Df~~R~~i   32 (69)
T 3f2b_A            1 PGLGTNVAQAIVRAREEGEFL----SKEDLQQRGKL   32 (69)
T ss_dssp             TTCCHHHHHHHHHHHHTSCCC----SHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHCCCCCC----CHHHHHHHHCC
T ss_conf             898999999999986579999----99999975289


Done!