HHsearch results for GI: 254780383 and protein with PDBid: 1cuk_A

>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.15  E-value=0.19  Score=28.98  Aligned_cols=70  Identities=21%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             CCHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2000101268999999997-300379999997523--554442001000014567776432358888999987542
Q gi|254780383|r   79 TPQKMLAIGEKKLQNYIRT-IGIYRKKSENIISLS--HILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI  151 (227)
Q Consensus        79 t~e~l~~a~~~el~~~ir~-~G~~~~KAk~I~~~a--~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~  151 (227)
                      +...+.+..+.++-..+.. .|--...|-.|....  ..+.+   -..-.|.+.|.++||||+|||.-|++..-++
T Consensus        59 ~LyGF~~~~Er~lF~~Li~VsGIGPK~AL~ILs~~~~~~l~~---aI~~~D~~~L~~vpGIGkKtA~rIilELkdK  131 (203)
T 1cuk_A           59 LLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVN---AVEREEVGALVKLPGIGKKTAERLIVEMKDR  131 (203)
T ss_dssp             EEEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHH---HHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH---HHHHCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             688619469999999985768857566888861279899999---9871899886069987799999999999999