HHsearch results for GI: 254780383 and protein with PDBid: 1ngn_A
>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=99.97 E-value=3.3e-31 Score=229.35 Aligned_cols=129 Identities=14% Similarity=0.262 Sum_probs=114.6
Q ss_pred HHHHHCCCCCCC------CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999976799987------77786899999999963332035679989987317620001012689999999973003799
Q gi|254780383|r 31 LFSLKWPSPKGE------LYYVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKK 104 (227)
Q Consensus 31 ~L~~~yp~~~~~------l~~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~~K 104 (227)
.++++.| |..+ ..|+|||++||++||||||+|++|++++.+||++||||++|++++.++|+++|+|+|||++|
T Consensus 9 ~~~kw~p-p~~~~~l~~E~~~~dpf~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~K 87 (155)
T 1ngn_A 9 SFKKWTP-PRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLR 87 (155)
T ss_dssp ---CCCC-CCCTTCCTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHH
T ss_pred HHHCCCC-CCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 3216799-998631157760498389999999987096999999999999988899999873499999997200268799
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHH
Q ss_conf 99997523554442001000014567776432358888999987542--1000121046787765
Q gi|254780383|r 105 SENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGI--PTIGVDTHIFRISNRI 167 (227)
Q Consensus 105 Ak~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~--p~~~VDthv~Rv~~Rl 167 (227)
|++|+++++.+ +|.++++|++|||||+||||++++|++|. +++++|.++.|.+.++
T Consensus 88 Ak~I~~~a~~~-------vp~~~~~l~~LpGVG~ytad~~~if~~~~~~~v~~~D~~lr~~~~w~ 145 (155)
T 1ngn_A 88 AKTIIKFSDEY-------LTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 145 (155)
T ss_dssp HHHHHHHHHHH-------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999997166-------54423316758982199999999998799888888758999999999