HHsearch results for GI: 254780383 and protein with PDBid: 2jhn_A
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.86 E-value=1.6e-20 Score=157.37 Aligned_cols=178 Identities=21% Similarity=0.238 Sum_probs=136.8
Q ss_pred HHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------------CCCCHHHCCCCHHHHH
Q ss_conf 99999997679998777-78689999999996333203567998998731--------------7620001012689999
Q gi|254780383|r 28 IFYLFSLKWPSPKGELY-YVNHFTLIVAVLLSAQSTDVNVNKATKHLFEI--------------ADTPQKMLAIGEKKLQ 92 (227)
Q Consensus 28 I~~~L~~~yp~~~~~l~-~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~--------------ypt~e~l~~a~~~el~ 92 (227)
.+..+.+.+|..+.+.. ..|||+.||.+|++||.+.........+|.++ ||||+.+++++.++|
T Consensus 97 ~l~~l~~~~~Glr~p~~~~~d~fE~lv~aIl~Qqis~~aA~~i~~rl~~~~G~~~~~~~~~~~~fPtp~~la~~~~~~L- 175 (295)
T 2jhn_A 97 KLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL- 175 (295)
T ss_dssp HHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHCCCHHHH-
T ss_conf 5799999779987889888899999999998515219999999999999958866776301037999999984999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Q ss_conf 999973003799999975235544420--0100001456777643235888899998754210001-2104678776565
Q gi|254780383|r 93 NYIRTIGIYRKKSENIISLSHILINEF--DNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGV-DTHIFRISNRIGL 169 (227)
Q Consensus 93 ~~ir~~G~~~~KAk~I~~~a~~i~~~~--~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~V-Dthv~Rv~~Rlgl 169 (227)
+.+|+.++||++|+++|+.+..+. +...++.++.|++|||||++||++|+++++|.++||+ |.+++|.+.++..
T Consensus 176 ---~~~Gl~~~Ka~~i~~lA~~~~~~~l~~~~~~e~~~~L~~i~GIGpWTA~~ill~~lg~d~fP~~D~~l~ral~~ly~ 252 (295)
T 2jhn_A 176 ---RECGLSRRKAELIVEIAKEENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALGKNVFPADDLGVRRAVSRLYF 252 (295)
T ss_dssp ---HHTTCCHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCCTTCHHHHHHHHHHHS
T ss_pred ---HHCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf ---77897388999998501135556541288588888998459948899999999816989522745999999999707
Q ss_pred HC-CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 40-788899999996218842267899999999665164899
Q gi|254780383|r 170 AP-GKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARK 210 (227)
Q Consensus 170 ~~-~~~~~~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~ 210 (227)
.+ ..++.++.+...+.+-+ ....+++.|-.|+++.|++.+
T Consensus 253 ~~~~~~~~~~~~~a~e~w~P-yrsya~~~Lw~~~R~~~~k~~ 293 (295)
T 2jhn_A 253 NGEIQSAEKVREIARERFGR-FARDILFYLFLYDRFFSKKTE 293 (295)
T ss_dssp TTCCCCHHHHHHHHHHHTGG-GHHHHHHHHHHHHHHTTC--C
T ss_pred CCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHCHHHCCCCC
T ss_conf 88899999999999875765-999999999984631155335