HHsearch results for GI: 254780383 and protein with PDBid: 3n5n_X
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=0 Score=387.79 Aligned_cols=209 Identities=19% Similarity=0.305 Sum_probs=187.8
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCCCCCC-----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 23998999999999999767999877778-----------6899999999963332035679989987317620001012
Q gi|254780383|r 18 CLYTPKELEEIFYLFSLKWPSPKGELYYV-----------NHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAI 86 (227)
Q Consensus 18 ~~~~~~~~~~I~~~L~~~yp~~~~~l~~~-----------~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a 86 (227)
......++..+...|..||...+.+|+|+ |||++|||+||||||++++|+.++++|+++|||+++|++|
T Consensus 8 ~~~~~~~~~~~~~~Ll~Wy~~~~R~lPWR~~~~~~~~~~~~py~vlvseimlqQT~~~~V~~~~~~~~~r~Pt~~~LA~A 87 (287)
T 3n5n_X 8 LFRDVAEVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASA 87 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC
T ss_conf 22888999999999999999669989988588765666788789999999981186999999999999987799999767
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 689999999973003799999975235544420010000145677-7643235888899998754210001210467877
Q gi|254780383|r 87 GEKKLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLT-RLPGIGRKGANVILSMAFGIPTIGVDTHIFRISN 165 (227)
Q Consensus 87 ~~~el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~-~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~ 165 (227)
++++|+++|+++|||+ ||++|+++|+.|+++|+|.+|.+..+++ +|||||+|||++||+++||+|+++|||||+||++
T Consensus 88 ~~~ev~~~~~glGyy~-ra~~l~~~a~~i~~~~~g~~p~~~~e~l~~LPGVG~kTA~aIl~~af~~~~~~VDtnV~RV~~ 166 (287)
T 3n5n_X 88 SLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLC 166 (287)
T ss_dssp CHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEE
T ss_conf 9999999998563899-999999999888898479887621544046887568999999998830400011487001355
Q ss_pred HHHHHCCC-CHH----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf 65654078-889----999999621884226789999999966516489989472840331768519
Q gi|254780383|r 166 RIGLAPGK-TPN----KVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227 (227)
Q Consensus 166 Rlgl~~~~-~~~----~~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~ 227 (227)
|+|+...+ +.. ++...+.+++|.+.+.+||++||+||+.||++++|+|+.|||++.|.+|++
T Consensus 167 Rl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~n~alm~lG~~iC~~~~P~C~~Cpl~~~C~~~~~ 233 (287)
T 3n5n_X 167 RVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQR 233 (287)
T ss_dssp HHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 6522267655440256677665404874443199999999878860779998888976114855652