HHSEARCH alignment of GI: 254780383 and SCOP domain: d1jmsa1

Alignment

Probab=92.34  E-value=0.11  Score=28.84  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999997300379999997523554442001000014567776432358888999987
Q gi|254780383|r   90 KLQNYIRTIGIYRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMA  148 (227)
Q Consensus        90 el~~~ir~~G~~~~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~  148 (227)
                      +|+++..-.|- .-|++.-..++..| +.+...| .+.++|.+|||||+.+|+.|.-+.
T Consensus        27 ~la~~~e~~g~-~fr~~AY~rAa~~i-~~l~~~i-~~~~~l~~i~GIGk~i~~kI~Eil   82 (95)
T d1jmsa1          27 ILAENDELREN-EGSCLAFMRASSVL-KSLPFPI-TSMKDTEGIPCLGDKVKSIIEGII   82 (95)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHH-HTCSSCC-CSGGGGTTCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC-CHHHHHHHHHHHHH-HHCCCCC-CCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999988489-18899999999999-8699655-889999743434289999999999

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: DNA polymerase beta, N-terminal domain-like
family: DNA polymerase beta, N-terminal domain-like
domain: Terminal deoxynucleotidyl transferase
species: Mouse (Mus musculus) [TaxId: 10090]