HHSEARCH alignment of GI: 254780383 and SCOP domain: d1rrqa1

Alignment
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=0  Score=392.20  Aligned_cols=201  Identities=19%  Similarity=0.343  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999997679998777---7868999999999633320356799899873176200010126899999999730037
Q gi|254780383|r   26 EEIFYLFSLKWPSPKGELY---YVNHFTLIVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYR  102 (227)
Q Consensus        26 ~~I~~~L~~~yp~~~~~l~---~~~p~~~LVa~iLs~qT~d~~v~~~~~~L~~~ypt~e~l~~a~~~el~~~ir~~G~~~  102 (227)
                      +++...|..||+..+.+|+   .+|||++||++||||||+|++|++++.+|+++||||++|+.+++++|+++|+++|||+
T Consensus         3 k~~~~~l~~wy~~~~r~lpWr~~~dp~~vLV~~iLsqqT~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~~~G~~~   82 (221)
T d1rrqa1           3 REFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYS   82 (221)
T ss_dssp             HHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHHTTSSCTH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCHHHH
T ss_conf             89999999999965998998989988999999999802929999999998888536288887215899986620301222


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-----CHHH
Q ss_conf             99999975235544420010000145677764323588889999875421000121046787765654078-----8899
Q gi|254780383|r  103 KKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGK-----TPNK  177 (227)
Q Consensus       103 ~KAk~I~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~ktA~~il~~~~~~p~~~VDthv~Rv~~Rlgl~~~~-----~~~~  177 (227)
                       ||+++++.+..++++|+|.+|.++++|++|||||+|||++||+|+||+|+|+|||||+||++|+|+..++     +..+
T Consensus        83 -ra~~l~~~~~~~~~~~~G~vp~~~~~Ll~LpGIG~kTA~~il~~a~~~p~~~VDt~v~Rv~~Rl~~~~~~~~~~~~~~~  161 (221)
T d1rrqa1          83 -RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKR  161 (221)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHTTCCSCTTSTTHHHH
T ss_pred             -HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             -3578998887776640798861899999888750478889999985586435575087777776335787313467778


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCC
Q ss_conf             99999621884226789999999966516489989472840331768519
Q gi|254780383|r  178 VEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ  227 (227)
Q Consensus       178 ~~~~l~~~~p~~~~~~~~~~li~~G~~iC~~~~P~C~~C~l~~~C~~~k~  227 (227)
                      ++..+..++|.+.|.++|++||+||+.||++++|+|+.|||++.|+||++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~  211 (221)
T d1rrqa1         162 FEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAE  211 (221)
T ss_dssp             HHHHHHHHCCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTGGGCHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHC
T ss_conf             77754201110210499999999989973889999999969434997606


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]