RPSBLAST alignment for GI: 254780383 and conserved domain: pfam00730
>gnl|CDD|144361 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein. This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family. Length = 144
Score = 125 bits (315), Expect = 1e-29
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 53 VAVLLSAQSTDVNVNKATKHLFE--IADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIIS 110
V+ +LS Q++D NK TK LFE TP+ + E++L+ I+ +G YR+K++ I
Sbjct: 1 VSAILSQQTSDKAANKITKRLFERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKE 60
Query: 111 LSHILINEFDNKIPQT---LEGLTRLPGIGRKGANVILSMAFG--IPTIGVDTHIFRISN 165
L+ IL+ + +P LE L LPG+GR A +L A G VDTH+ R++
Sbjct: 61 LARILVEGYLGLVPLDLEELEALLALPGVGRWTAEAVLLFALGRPDVFPAVDTHVRRVAK 120
Query: 166 RIGLAPG-KTPNKVEQSLLRIIPP 188
R+GL TP +VE+ L + PP
Sbjct: 121 RLGLIKEKPTPEEVERELEELWPP 144