BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus
Liberibacter asiaticus str. psy62]
(227 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 468 bits (1205), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MVSSKKSDSYQGNSPLGCLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQ 60
MVSSKKSDSYQGNSPLGCLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQ
Sbjct: 1 MVSSKKSDSYQGNSPLGCLYTPKELEEIFYLFSLKWPSPKGELYYVNHFTLIVAVLLSAQ 60
Query: 61 STDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFD 120
STDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFD
Sbjct: 61 STDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFD 120
Query: 121 NKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTPNKVEQ 180
NKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTPNKVEQ
Sbjct: 121 NKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHIFRISNRIGLAPGKTPNKVEQ 180
Query: 181 SLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227
SLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ
Sbjct: 181 SLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCIISNLCKRIKQ 227
>gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 356
Score = 51.2 bits (121), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 101 YRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHI 160
Y ++ N+ + I++ +++ P +E L +LPGIG A+ I+++AF + VDT+I
Sbjct: 91 YYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNI 150
Query: 161 FRISNRIG--LAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVLH-GRYVCKARKPQCQSCI 217
RI +R + P +K ++ R I + ++ G +C + KP C C
Sbjct: 151 ERIISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCP 210
Query: 218 ISNLC 222
I C
Sbjct: 211 IQKNC 215
>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 461
Score = 26.6 bits (57), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 115 LINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIP--TIGVDTHI--------FRIS 164
L FD + T LTR+ G GR GA + + G P IG I RI+
Sbjct: 232 LARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIA 291
Query: 165 NRIGLAPGKTPNKVEQS 181
NRI L G + VE++
Sbjct: 292 NRI-LGMGDVVSLVEKA 307
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 25.0 bits (53), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 25 LEEIFYLFSLKWPSPKGELYYVNHFTLIVAV--------LLSAQSTDVNVNKATKHL-FE 75
+EE Y F L K YY +H I+ + + + D+++++ T +
Sbjct: 160 MEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIK 219
Query: 76 IADTPQKMLAIGEKKLQNYIRTIG 99
I D PQ ++ + L NY+ T G
Sbjct: 220 IPDDPQYIMYVWIDALTNYLTTTG 243
>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 177 KVEQSLLRIIPPKHQYNAHYWLVLHGR 203
+ E++LLRI KH+ ++ Y LV +G+
Sbjct: 95 EAEKNLLRISGKKHRISSAYVLVQNGK 121
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 23.1 bits (48), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 111 LSHILINEFDNKIPQTLEGLTRLPGI--GRKGANVILSMAFGIPT 153
L H++ DN I ++LEG + + G+ + GIPT
Sbjct: 41 LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 481
Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 80 PQKMLAIGEKKLQNYIRTIGIYRKKSENIISLSHILINEFD----NKIPQTL 127
P+K+L G K ++ I G + E I SH++ FD +K P++L
Sbjct: 140 PKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPKSL 191
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 22.7 bits (47), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 21 TPKELEEIFYLFSLKWPSPKG 41
T KEL+ + ++SLK+P +G
Sbjct: 204 TTKELKRFYNIYSLKFPFFRG 224
>gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 337
Score = 21.9 bits (45), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 106 ENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILS-----MAFGIPTIGV 156
E+ +S+S +++ F +T+E + +P + R +V + GIP I +
Sbjct: 32 EHRLSVSDLILPIFLTSGEKTVESINSMPDVMRMSIDVAVEKIKQVADLGIPAIAI 87
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,039
Number of Sequences: 1233
Number of extensions: 5751
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 11
length of query: 227
length of database: 328,796
effective HSP length: 71
effective length of query: 156
effective length of database: 241,253
effective search space: 37635468
effective search space used: 37635468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)