HHsearch alignment for GI: 254780384 and conserved domain: cd04278

>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=99.80  E-value=4.1e-19  Score=132.82  Aligned_cols=138  Identities=29%  Similarity=0.371  Sum_probs=89.5

Q ss_pred             ECCCEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCC--CCEEEECC---------------C
Q ss_conf             404346750576567502688750799999999999998865747568982478--71689615---------------8
Q gi|254780384|r   23 WSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIH--SDIKFISS---------------N   85 (665)
Q Consensus        23 ~~~~~~~~~~d~~~~~~~t~~it~l~~~~~~~~R~Al~~ws~va~ItF~Ev~~~--~d~~f~~~---------------~   85 (665)
T Consensus         2 W~k~~lty~i~~~~~~-------l~~~~~r~~i~~Af~~Ws~v~~l~F~ev~~~~~AdI~i~f~~~~h~d~~~fDG~gg~   74 (157)
T cd04278           2 WSKTNLTYRILNYPPD-------LPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGT   74 (157)
T ss_pred             CCCCCEEEEEECCCCC-------CCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf             9887058998427999-------899999999999999986647855598158887878999866766898885788886


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             53566314677531224433544333666-66734663003234655187888876667666677754101420244675
Q gi|254780384|r   86 NGYVCTPRYDSRYFMEINFDKADVWRYGI-GKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSFLTSVMS  164 (665)
Q Consensus        86 ~g~a~~p~~~~~~~~~~~~~~~~~~~~~~-~~g~y~~~t~iHEIGHALGL~Hp~~~~~g~~~~~~~~~~~~d~~~~TvMS  164 (665)
T Consensus        75 lahA~~p~~~---~G~ihfd~~e~w~~~~~~~~~~l~~va~HEIGHaLGL~Hs~~-------------------~~siM~  132 (157)
T cd04278          75 LAHAFFPGGI---GGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHALGLGHSSD-------------------PDSIMY  132 (157)
T ss_pred             EEEEECCCCC---CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-------------------CCCEEC
T ss_conf             8987568886---641887777662126788760189999987565406888899-------------------975333


Q ss_pred             ECCCCCCCCCCCCCEECCHHHHHHHHHHHHCC
Q ss_conf             23567766665520002112214899998608
Q gi|254780384|r  165 YFMPQDSMMDASFGYCATPMVSDIVAVQKIYG  196 (665)
Q Consensus       165 Y~~~~~~~~~~~~~~~~tpm~~DI~Alq~lYG  196 (665)
T Consensus       133 p~y~~~-------~~~~~L~~dDi~giq~LYG  157 (157)
T cd04278         133 PYYQGP-------VPKFKLSQDDIRGIQALYG  157 (157)
T ss_pred             CCCCCC-------CCCCCCCHHHHHHHHHHCC
T ss_conf             503588-------8789989899999998759