HHsearch alignment for GI: 254780384 and conserved domain: cd04278
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=99.80 E-value=4.1e-19 Score=132.82 Aligned_cols=138 Identities=29% Similarity=0.371 Sum_probs=89.5
Q ss_pred ECCCEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCC--CCEEEECC---------------C
Q ss_conf 404346750576567502688750799999999999998865747568982478--71689615---------------8
Q gi|254780384|r 23 WSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIH--SDIKFISS---------------N 85 (665)
Q Consensus 23 ~~~~~~~~~~d~~~~~~~t~~it~l~~~~~~~~R~Al~~ws~va~ItF~Ev~~~--~d~~f~~~---------------~ 85 (665)
T Consensus 2 W~k~~lty~i~~~~~~-------l~~~~~r~~i~~Af~~Ws~v~~l~F~ev~~~~~AdI~i~f~~~~h~d~~~fDG~gg~ 74 (157)
T cd04278 2 WSKTNLTYRILNYPPD-------LPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGT 74 (157)
T ss_pred CCCCCEEEEEECCCCC-------CCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf 9887058998427999-------899999999999999986647855598158887878999866766898885788886
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 53566314677531224433544333666-66734663003234655187888876667666677754101420244675
Q gi|254780384|r 86 NGYVCTPRYDSRYFMEINFDKADVWRYGI-GKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSFLTSVMS 164 (665)
Q Consensus 86 ~g~a~~p~~~~~~~~~~~~~~~~~~~~~~-~~g~y~~~t~iHEIGHALGL~Hp~~~~~g~~~~~~~~~~~~d~~~~TvMS 164 (665)
T Consensus 75 lahA~~p~~~---~G~ihfd~~e~w~~~~~~~~~~l~~va~HEIGHaLGL~Hs~~-------------------~~siM~ 132 (157)
T cd04278 75 LAHAFFPGGI---GGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHALGLGHSSD-------------------PDSIMY 132 (157)
T ss_pred EEEEECCCCC---CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-------------------CCCEEC
T ss_conf 8987568886---641887777662126788760189999987565406888899-------------------975333
Q ss_pred ECCCCCCCCCCCCCEECCHHHHHHHHHHHHCC
Q ss_conf 23567766665520002112214899998608
Q gi|254780384|r 165 YFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196 (665)
Q Consensus 165 Y~~~~~~~~~~~~~~~~tpm~~DI~Alq~lYG 196 (665)
T Consensus 133 p~y~~~-------~~~~~L~~dDi~giq~LYG 157 (157)
T cd04278 133 PYYQGP-------VPKFKLSQDDIRGIQALYG 157 (157)
T ss_pred CCCCCC-------CCCCCCCHHHHHHHHHHCC
T ss_conf 503588-------8789989899999998759