HHsearch results for GI: 254780384 and protein with PDBid: 1cge_A
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
Probab=99.90 E-value=4.7e-24 Score=161.32 Aligned_cols=146 Identities=26% Similarity=0.383 Sum_probs=92.6
Q ss_pred HHCCE-EECCCEEEEECCCCCCCEEEEEEEEC-CHHHHHHHHHHHHHHHHHHCCEEEEECC-CCCEEEECCCC-------
Q ss_conf 73583-54043467505765675026887507-9999999999999886574756898247-87168961585-------
Q gi|254780384|r 17 LLRDQ-YWSNYFIRYKPDVLTTHRLSFDITEL-NPNAQEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNN------- 86 (665)
Q Consensus 17 l~~~~-~~~~~~~~~~~d~~~~~~~t~~it~l-~~~~~~~~R~Al~~ws~va~ItF~Ev~~-~~d~~f~~~~~------- 86 (665)
|+.|. .|....+++++..++. .+ .+++++++|.||++|++|++|+|+||.. .+++.+...+.
T Consensus 1 ~~~g~~kW~~~~iTy~i~~~~~--------~~~~~~~~~~i~~Af~~W~~v~~i~F~ev~~~~adi~~~~~~~~~~~~~~ 72 (168)
T 1cge_A 1 LTEGNPRWEQTHLRYRIENYTP--------DLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSP 72 (168)
T ss_dssp CCCCCCCCSSSEEEEEECSCCT--------TSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSSC
T ss_pred CCCCCCCCCCCEEEEEEECCCC--------CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCCCC
T ss_conf 9888886899757899824799--------99989999999999999857166389991478885689964413356655
Q ss_pred --------EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------356631467753122443354433366666734663003234655187888876667666677754101420
Q gi|254780384|r 87 --------GYVCTPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSF 158 (665)
Q Consensus 87 --------g~a~~p~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~t~iHEIGHALGL~Hp~~~~~g~~~~~~~~~~~~d~~ 158 (665)
+.+..|.. .......++....+.. ...+.+.+.+++|||||||||+||.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~~~~v~~HEiGHaLGL~H~~~~~----------------- 132 (168)
T 1cge_A 73 FDGPGGNLAHAFQPGP--GIGGDAHFDEDERWTN-NFREYNLHRVAAHELGHSLGLSHSTDIG----------------- 132 (168)
T ss_dssp CCSSSSCCEEECCSSS--TTTTCEEEETTSCCBS-SSSSCBHHHHHHHHHHHHTTCCCCSCTT-----------------
T ss_pred CCCCCCEEEEEECCCC--CEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCC-----------------
T ss_conf 5787761577666888--6110598013101255-6430257888987651111689989987-----------------
Q ss_pred EEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 244675235677666655200021122148999986087666
Q gi|254780384|r 159 LTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKG 200 (665)
Q Consensus 159 ~~TvMSY~~~~~~~~~~~~~~~~tpm~~DI~Alq~lYGan~~ 200 (665)
+||.+.. ....+.+++..||+|||+|||+++.
T Consensus 133 --svM~~~~--------~~~~~~~l~~~Di~aiq~LYG~~~~ 164 (168)
T 1cge_A 133 --ALMYPSY--------TFSGDVQLAQDDIDGIQAIYGRSQN 164 (168)
T ss_dssp --STTCSSC--------CCCSCCCCCHHHHHHHHHHHCC---
T ss_pred --CCCCCCC--------CCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf --6154654--------5788788999999999997195989