RPSBLAST alignment of GI: 254780384 and protein with PDBid: 1eak

>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Length = 421

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 33/101 (32%)

Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMH---PGSYNGGYPVYGVDNDYENDS 157
             N+D    W +   +G  L   A H+ GHA+GL H   PG+     P+Y    ++    
Sbjct: 347 TANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALM--APIYTYTKNFR--- 401

Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP 198
                    + QD                DI  +Q++YGA 
Sbjct: 402 ---------LSQD----------------DIKGIQELYGAS 417