RPSBLAST alignment of GI: 254780384 and protein with PDBid: 1l6j

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Length = 425

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 30/147 (20%)

Query: 37  THRLSFDITELNPNAQE-VARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92
           T+ +     +L     +     A   WS V  LTF           I+F  + +G     
Sbjct: 103 TYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHG--DGY 160

Query: 93  RYDSR-------YFME------INFDKADVWRYGIGKGTILSHN-----ALHEIGHALGL 134
            +D +       +          +FD  ++W  G G             A H      G 
Sbjct: 161 PFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGR 220

Query: 135 MH-----PGSYNGGYPVYGVDNDYEND 156
            +      G    G P      +Y+ D
Sbjct: 221 SYSACTTDGRS-DGLPWCSTTANYDTD 246