RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62] (665 letters) >1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P Length = 479 Score = 132 bits (332), Expect = 3e-31 Identities = 93/339 (27%), Positives = 149/339 (43%), Gaps = 34/339 (10%) Query: 3 NIKPVYTTERIADHLLRDQY-WSNYFIRYKPDVLTTHRLS---------FDITELNPNAQ 52 N K Y+ ++ A + R+ W+ + K LT L + N Sbjct: 43 NGKTSYSIDQAAAQITRENVSWNGTNVFGKSANLTFKFLQSVSSIPSGDTGFVKFNAEQI 102 Query: 53 EVARWALGEWSKVVDLTFEETSIHS--DIKFISSNNGYVCTPRYDSRYFM---------- 100 E A+ +L WS V +LTF E + + +I F + Y ++ + Sbjct: 103 EQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAG 162 Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDN-DYENDSFL 159 ++ G HEIGHALGL HPG YN G ++ Y DS+ Sbjct: 163 SSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQ 222 Query: 160 TSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPK----------GSLGNNIYKI 209 S+MS++ ++ D + Y PM+ DI A+Q++YGA + + Sbjct: 223 FSIMSFWGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFY 282 Query: 210 EVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIE 269 I +++D+GG D D + I+LN S+S +GG + N++IA IE Sbjct: 283 TATDSSKALIFSVWDAGGTDTFDFSGYSN-NQRINLNEGSFSDVGGLKGNVSIAHGVTIE 341 Query: 270 SVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308 + +G SGND+++GNSA+N+ +GNDV G +G DT + Sbjct: 342 NAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLY 380 >1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa PAO1} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A Length = 479 Score = 131 bits (330), Expect = 5e-31 Identities = 91/345 (26%), Positives = 147/345 (42%), Gaps = 40/345 (11%) Query: 3 NIKPVYTTERIADHLLRDQY-WSN----------YFIRYKPDVLTTHRLSFDIT------ 45 N P YT ++ A+ +LR+Q W Y KP+ + Sbjct: 34 NGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGK 93 Query: 46 --ELNPNAQEVARWALGEWSKVVDLTFEETSI--HSDIKFISSNN-----GYVCTPRYDS 96 + Q A+ +L WS V ++ F + D+ F + ++ + P Sbjct: 94 FSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPD 153 Query: 97 RYFMEINFDKADVW--RYGIGKGTILSHNALHEIGHALGLMHPGSYNGGY-PVYGVDNDY 153 + + + G HEIGH LGL HPG YN G D Y Sbjct: 154 ALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATY 213 Query: 154 ENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP-KGSLGNNIYKIEVQ 212 D+ SVMSY+ Q++ D Y + P++ DI A+QK+YGA G+ +Y Sbjct: 214 AEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSN 273 Query: 213 QK---------DSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIA 263 + S + +++D+GG+D LD + I+LN ++ S +GG + N++IA Sbjct: 274 TERDFYSATSSSSKLVFSVWDAGGNDTLDFS-GFSQNQKINLNEKALSDVGGLKGNVSIA 332 Query: 264 QHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308 +E+ +G SG+D++IGN NV +GND+ G G D + Sbjct: 333 AGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLW 377 >1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Length = 463 Score = 130 bits (327), Expect = 1e-30 Identities = 98/341 (28%), Positives = 145/341 (42%), Gaps = 36/341 (10%) Query: 3 NIKPVYTTERIADHLLRDQY-WSN----------YFIRYKPDVLTTHRLSFDITELNPNA 51 N KP +T +++AD L R W + Y P V R ++ + Sbjct: 26 NGKPSFTVDQVADQLTRSGASWHDLNNDGVINLTYTFLTAPPVGYASRGLGTFSQFSALQ 85 Query: 52 QEVARWALGEWSKVVDLTFEETS------IHSDIKFISSNNG---YVCTPRYDSRYFMEI 102 +E A+ +L W+ V +TF E H S++NG + P + Sbjct: 86 KEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWY 145 Query: 103 NFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYG-VDNDYENDSFLTS 161 +K G+G HEIGH LGL HPG YN G D Y D+ S Sbjct: 146 LINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVYAEDTRAYS 205 Query: 162 VMSYFMPQDS----MMDASFGYCATPMVSDIVAVQKIYGAP----------KGSLGNNIY 207 VMSY+ +++ Y + P++ DI AVQK+YGA + + Sbjct: 206 VMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANLETRADDTVYGFNSTADRD 265 Query: 208 KIEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTV 267 I +++D GG+D LD + I+L S+S +GG N++IAQ Sbjct: 266 FYSATSSTDKLIFSVWDGGGNDTLDFS-GFSQNQKINLTAGSFSDVGGMTGNVSIAQGVT 324 Query: 268 IESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308 IE+ +G SGND++IGN A NV +GND+ G G D + Sbjct: 325 IENAIGGSGNDLLIGNDAANVLKGGAGNDIIYGGGGADVLW 365 >1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A 1smp_A 1srp_A Length = 471 Score = 96.2 bits (238), Expect = 2e-20 Identities = 90/350 (25%), Positives = 139/350 (39%), Gaps = 44/350 (12%) Query: 3 NIKPVYTTERIADHLLRD-QYWSNYFIRYKPDVLTTHRLSF--------------DITEL 47 N K ++ E+ + R+ Q W+ Y + +P LT SF +++ Sbjct: 25 NGKDSFSNEQAGLFITRENQTWNGYKVFGQPVKLT---FSFPDYKFSSTNVAGDTGLSKF 81 Query: 48 NPNAQEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYD------------ 95 + Q+ A+ +L W+ V ++TF E + N YD Sbjct: 82 SAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFLPNT 141 Query: 96 ----SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPG-SYNGGYPVYGVD 150 + ++ HEIGHALGL HPG G D Sbjct: 142 IWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYAD 201 Query: 151 NDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYKIE 210 Y D+ S+MSY+ ++ D Y A P++ DI A+Q +YGA + + Sbjct: 202 VTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTRTGDTVYGF 261 Query: 211 VQQKDSPFIQTIYDSGGDDLLDLTLIGG---------VKNYIDLNTESWSSIGGYEKNMT 261 F+ T +S G I+LN +S+S +GG + N++ Sbjct: 262 NSNTGRDFLSTTSNSQKVIFAAWDAGGNDTFDFSGYTANQRINLNEKSFSDVGGLKGNVS 321 Query: 262 IAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYA 311 IA IE+ +G SGNDV++GN+ANNV +GNDV G G D + A Sbjct: 322 IAAGVTIENAIGGSGNDVIVGNAANNVLKGGAGNDVLFGGGGADELWGGA 371 >1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 Length = 165 Score = 76.4 bits (187), Expect = 2e-14 Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 41/185 (22%) Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEET-SIHSDIKFISSNNG 87 R++ LT L F + ++ AL WS+V LTF E +DI + Sbjct: 8 RWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYW 67 Query: 88 YVCTPRYDSRYF-------------MEINFDKADVWRYGIGKGTILSHNALHEIGHALGL 134 + +D +++FD + W G +GT L A HE GH LGL Sbjct: 68 HGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGL 127 Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194 H + ++MS F +F Y + D +Q + Sbjct: 128 QHTTAAK-------------------ALMSPF--------YTFRYPLSLSPDDRRGIQHL 160 Query: 195 YGAPK 199 YG P+ Sbjct: 161 YGRPQ 165 >1mmq_A Matrilysin; metalloprotease; HET: RRS; 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 1mmp_A* 1mmr_A* 2ddy_A* Length = 170 Score = 70.6 bits (172), Expect = 9e-13 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 39/187 (20%) Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIHS-DIKFISSNNG 87 ++ V+T +S+ + + AL W K + L F + + DI + Sbjct: 9 KWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGA 68 Query: 88 YVCTPRYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGL 134 + + +D + + +FD+ + W G G + A HE+GH+LG+ Sbjct: 69 HGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGM 128 Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194 H N +VM DI +QK+ Sbjct: 129 GHSSDPN-------------------AVMYPTYGNGD------PQNFKLSQDDIKGIQKL 163 Query: 195 YGAPKGS 201 YG S Sbjct: 164 YGKRSNS 170 >1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A {Homo sapiens} SCOP: d.92.1.11 PDB: 1hov_A* Length = 161 Score = 66.0 bits (160), Expect = 3e-11 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 41/161 (25%) Query: 52 QEVARWALGEWSKVVDLTFEET-SIHSDIKFISSNNGYVCTPRYD-------------SR 97 + A WS V L F +DI + +D + Sbjct: 27 DDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTG 86 Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157 + +FD ++W G G G L A HE GHA+GL H Sbjct: 87 VGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLEHSQDPG---------------- 130 Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP 198 ++M+ ++ DI +Q++YGA Sbjct: 131 ---ALMAPIY--------TYTKNFRLSQDDIKGIQELYGAS 160 >2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A Length = 167 Score = 62.1 bits (150), Expect = 3e-10 Identities = 35/166 (21%), Positives = 52/166 (31%), Gaps = 47/166 (28%) Query: 52 QEVARWALGEWSKVVDLTFEETSIHSD----IKFISSNNGYVC--------------TPR 93 + R A WS L+F + + IK+ N+G P Sbjct: 30 ENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPP 89 Query: 94 YDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDY 153 Y ++FD + W G G L A HEIGH LG+ H Sbjct: 90 AGGNYAGHLHFDDDENWSIN-GSGIDLITVAAHEIGHLLGIEHS---------------- 132 Query: 154 ENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPK 199 + +++M + G D +AV +YG P Sbjct: 133 ---NVSSALMYPYYT---------GIKRQLDNDDCLAVWDLYGYPF 166 >1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 Length = 255 Score = 61.4 bits (148), Expect = 6e-10 Identities = 36/181 (19%), Positives = 54/181 (29%), Gaps = 39/181 (21%) Query: 35 LTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIH-SDIKFISSNNGYVCTPR 93 LT +++ AL W +V LTF +DI + + Sbjct: 97 LTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYP 156 Query: 94 YD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSY 140 +D + +FD + W GT L A HEIGH+LGL H + Sbjct: 157 FDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDT-TGTNLFLVAAHEIGHSLGLFHSANT 215 Query: 141 NGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKG 200 ++M + DI +Q +YG P Sbjct: 216 E-------------------ALMYPLYH-----SLTDLTRFRLSQDDINGIQSLYGPPPD 251 Query: 201 S 201 S Sbjct: 252 S 252 >1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 1ciz_A* 1caq_A* ... Length = 173 Score = 61.0 bits (147), Expect = 8e-10 Identities = 37/185 (20%), Positives = 55/185 (29%), Gaps = 44/185 (23%) Query: 36 TTHRLSFDITELNPN-----AQEVARWALGEWSKVVDLTFEE-TSIHSDIKFISSNNGYV 89 L++ I P+ AL W +V LTF +DI + + Sbjct: 11 RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHG 70 Query: 90 CTPRYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMH 136 +D + +FD + W GT L A HEIGH+LGL H Sbjct: 71 DFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDT-TGTNLFLVAAHEIGHSLGLFH 129 Query: 137 PGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196 + ++M + DI +Q +YG Sbjct: 130 SANTE-------------------ALMYPLYH-----SLTDLTRFRLSQDDINGIQSLYG 165 Query: 197 APKGS 201 P S Sbjct: 166 PPPDS 170 >1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ... Length = 163 Score = 58.3 bits (140), Expect = 5e-09 Identities = 31/182 (17%), Positives = 49/182 (26%), Gaps = 40/182 (21%) Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNNG 87 +++ LT ++ + + A WS L F S +DI Sbjct: 8 KWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRD 67 Query: 88 YVCTPRYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGL 134 + +D + +FD + W L A HE GH+LGL Sbjct: 68 HGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTN-TSANYNLFLVAAHEFGHSLGL 126 Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194 H ++M + DI +Q I Sbjct: 127 AHSSDPG-------------------ALMYPN------YAFRETSNYSLPQDDIDGIQAI 161 Query: 195 YG 196 YG Sbjct: 162 YG 163 >1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* Length = 168 Score = 57.9 bits (139), Expect = 6e-09 Identities = 32/163 (19%), Positives = 48/163 (29%), Gaps = 42/163 (25%) Query: 52 QEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNNGYVCTPRYD-------------SR 97 A WS V LTF + S +DI + +D Sbjct: 30 DHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPG 89 Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157 + +FD+ + W + L A HE+GH+LGL H Sbjct: 90 IGGDAHFDEDERWTN-NFREYNLHRVAAHELGHSLGLSHSTDIG---------------- 132 Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKG 200 ++M +F DI +Q IYG + Sbjct: 133 ---ALMYPSY--------TFSGDVQLAQDDIDGIQAIYGRSQN 164 >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Length = 450 Score = 54.0 bits (129), Expect = 1e-07 Identities = 35/165 (21%), Positives = 50/165 (30%), Gaps = 44/165 (26%) Query: 52 QEVARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTPRYD-----------SR 97 A WS V LTF + S I F+ ++ Sbjct: 112 DHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPG 171 Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNG-GYPVYGVDNDYEND 156 + +FD+ + W + L A HE+GH+LGL H YP Y D + Sbjct: 172 IGGDAHFDEDERWTN-NFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQ-- 228 Query: 157 SFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGS 201 + QD DI +Q IYG + Sbjct: 229 ----------LAQD----------------DIDGIQAIYGRSQNP 247 >2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens} Length = 160 Score = 53.8 bits (128), Expect = 1e-07 Identities = 28/158 (17%), Positives = 39/158 (24%), Gaps = 38/158 (24%) Query: 52 QEVARWALGEWSKVVDLTFEETS-------------IHSDIKFISSNNGYVCTPRYDSRY 98 + AL WS V L+F + H D G + Sbjct: 27 DKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEG 86 Query: 99 FMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSF 158 G L A HE GHALGL H + Sbjct: 87 LGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPS----------------- 129 Query: 159 LTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196 ++M + Y D+ +Q +YG Sbjct: 130 --ALMYPTYKYKN------PYGFHLPKDDVKGIQALYG 159 >1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase/inhibitor), acetohydroxamic acid, hydrolase; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* 3f1a_A* 2wo9_A* 2wo8_A* 2woa_A* ... Length = 159 Score = 53.4 bits (127), Expect = 2e-07 Identities = 33/159 (20%), Positives = 45/159 (28%), Gaps = 40/159 (25%) Query: 52 QEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRY--------------DSR 97 R A WS V L F + + + G S Sbjct: 27 DYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSG 86 Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157 + +FD+ + W G GT L A+HEIGH+LGL H Sbjct: 87 IGGDAHFDEDEFWTTHSG-GTNLFLTAVHEIGHSLGLGHSSDPK---------------- 129 Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196 +VM DI +Q +YG Sbjct: 130 ---AVMFPT------YKYVDINTFRLSADDIRGIQSLYG 159 >2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV collagenase) (92...; hydrolase, S1-prime pocket; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A* Length = 159 Score = 52.2 bits (124), Expect = 4e-07 Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 41/158 (25%) Query: 52 QEVARWALGEWSKVVDLTFEET-SIHSDIKFISSNNGYVCTPRYDSRY------------ 98 + A WS V LTF S +DI + +D + Sbjct: 29 DDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPG 88 Query: 99 -FMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157 + +FD ++W G G+G L A H+ GHALGL H Sbjct: 89 IQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPE---------------- 132 Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIY 195 ++M F D+ ++ +Y Sbjct: 133 ---ALMYPMY--------RFTEGPPLHKDDVNGIRHLY 159 >3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M Length = 181 Score = 51.9 bits (123), Expect = 4e-07 Identities = 30/174 (17%), Positives = 44/174 (25%), Gaps = 49/174 (28%) Query: 52 QEVARWALGEWSKVVDLTFEETSIHS-----------DIKFISSNNGYVC---------- 90 E R A W L F E I F +G Sbjct: 30 YEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLA 89 Query: 91 ---TPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVY 147 P + + + R G + A+HE+GHALGL H + Sbjct: 90 HAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPS------ 143 Query: 148 GVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGS 201 ++M+ F D +Q++YG G Sbjct: 144 -------------AIMAPFYQWMD------TENFVLPDDDRRGIQQLYGGESGF 178 >1bqq_M CDMT1-MMP, membrane-type matrix metalloproteinase, MMP-14; matrix metalloproteinase, tissue inhibitor of metalloproteinases, proteinase complex; 2.75A {Homo sapiens} SCOP: d.92.1.11 PDB: 1buv_M Length = 174 Score = 51.9 bits (123), Expect = 4e-07 Identities = 29/170 (17%), Positives = 43/170 (25%), Gaps = 49/170 (28%) Query: 52 QEVARWALGEWSKVVDLTFEETSIHSD-----------IKFISSNNGYVC---------- 90 E R A W L F E I F +G Sbjct: 28 YEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLA 87 Query: 91 ---TPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVY 147 P + + + R G + A+HE+GHALGL H + Sbjct: 88 HAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPS------ 141 Query: 148 GVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGA 197 ++M+ F D +Q++YG Sbjct: 142 -------------AIMAPFYQWMD------TENFVLPDDDRRGIQQLYGG 172 >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Length = 365 Score = 51.5 bits (122), Expect = 7e-07 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 16/120 (13%) Query: 37 THRLSFDITELNPNAQ-EVARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92 T+R++ ++N R A WS V L F + + + F +G Sbjct: 10 TYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAF 69 Query: 93 RYDSRYFM-----------EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYN 141 + +FD+ + W G GT L A+HEIGH+LGL H Sbjct: 70 DGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG-GTNLFLTAVHEIGHSLGLGHSSDPK 128 >1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11 Length = 169 Score = 49.7 bits (117), Expect = 2e-06 Identities = 36/172 (20%), Positives = 50/172 (29%), Gaps = 48/172 (27%) Query: 48 NPNAQEVARWALGEWSKVVDLTFEET----------SIHSDIKFISSNNGYVCT------ 91 +P ++ R A W V LTFEE + I F S +G Sbjct: 22 DPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGG 81 Query: 92 -------PRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGY 144 P + D+ G L A+HE+GHALGL H Sbjct: 82 FLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPT--- 138 Query: 145 PVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196 ++M+ F D+ +QKIYG Sbjct: 139 ----------------AIMAPF------YQYMETDNFKLPNDDLQGIQKIYG 168 >830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 3elm_A* 2ow9_A* 2ozr_A* 2d1n_A* 1fls_A* 1fm1_A* 1ztq_A* 2e2d_A 2pjt_A* 1cxv_A* Length = 168 Score = 49.5 bits (117), Expect = 2e-06 Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 40/184 (21%) Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNNG 87 ++ LT +++ + ++ + A WS V L F +DI Sbjct: 9 KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKE 68 Query: 88 YVCTPRYDSRYFME-------------INFDKADVWRYGIGKGTILSHNALHEIGHALGL 134 + +D + +FD D KG L A HE GH+LGL Sbjct: 69 HGDFYPFDGPSGLLAHAFPPGPNYGGDAHFD-DDETWTSSSKGYNLFLVAAHEFGHSLGL 127 Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194 H ++M D+ +Q + Sbjct: 128 DHSKDPG-------------------ALMFPIYTYTGKSH------FMLPDDDVQGIQSL 162 Query: 195 YGAP 198 YG Sbjct: 163 YGPG 166 >2z8x_A Lipase; beta roll, calcium binding protein, RTX protein, hydrolase; 1.48A {Pseudomonas SP} PDB: 2z8z_A 2zj6_A 2zj7_A Length = 617 Score = 46.2 bits (109), Expect = 2e-05 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 1/112 (0%) Query: 200 GSLGNNIYKIEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKN 259 + G ++ + ++ DD+ ++ T+ +S+ G Sbjct: 439 DANGGISITRDIGSIVTKEPGFLWGLFKDDVTH-SVTASGLKVGSNVTQYDASVKGTNGA 497 Query: 260 MTIAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYA 311 T+ H + + G GND +IG N+VF +GND+ + G DTF + Sbjct: 498 DTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNG 549 Score = 36.9 bits (85), Expect = 0.013 Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 273 GSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308 G+ +IG+ +N++ SGND +G +G DTF Sbjct: 364 THKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFR 399 Score = 36.2 bits (83), Expect = 0.024 Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 244 DLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSG 303 +L+ + ++ + N H ++GS ND++ G S N+ +GND F G Sbjct: 344 NLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGG 403 Query: 304 LDTFF 308 + Sbjct: 404 YNVIL 408 Score = 35.8 bits (82), Expect = 0.033 Identities = 13/37 (35%), Positives = 20/37 (54%) Query: 273 GSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFY 309 G SGND + G + N+ F + G +V G +G +T Sbjct: 382 GGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDL 418 Score = 34.6 bits (79), Expect = 0.077 Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 270 SVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFY 309 + G +GND NV +GN+ D ++TF + Sbjct: 388 YLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDF 427 Score = 31.9 bits (72), Expect = 0.51 Identities = 9/95 (9%), Positives = 27/95 (28%), Gaps = 5/95 (5%) Query: 219 IQTIYDSGGDDLLD-----LTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVG 273 D G+ + +++ + + + + + ++ + Sbjct: 425 FDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGLKVGSNV 484 Query: 274 SSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308 + + V G + + +G D G G D Sbjct: 485 TQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLI 519 Score = 30.8 bits (69), Expect = 0.94 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 14/153 (9%) Query: 221 TIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVV 280 G +IG N + + G N T G +V+ Sbjct: 361 NAETHKGST----FIIGSDSNDLIQGGSGNDYLEGRAGNDTF---------RDGGGYNVI 407 Query: 281 IGNSANNVFFESSGNDVFD-GSSGLDTFFYYAPSYLYKIYRFENAIIVYDANEHKQDFLS 339 +G + NN + FD + G + + I R +I+ + F Sbjct: 408 LGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKD 467 Query: 340 DVERLRFADQCIDSVNVKQRSILEYTASYEDLI 372 DV A NV Q + D + Sbjct: 468 DVTHSVTASGLKVGSNVTQYDASVKGTNGADTL 500 Score = 30.8 bits (69), Expect = 1.1 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 271 VVGSSGNDVVIGNSANNVFFES--SGNDVFDGSSGLDTF 307 VG +GND++ + F + G D G + D Sbjct: 527 FVGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKL 565 >1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Length = 425 Score = 42.7 bits (100), Expect = 2e-04 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 30/147 (20%) Query: 37 THRLSFDITELNPNAQE-VARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92 T+ + +L + A WS V LTF I+F + +G Sbjct: 103 TYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHG--DGY 160 Query: 93 RYDSR-------YFME------INFDKADVWRYGIGKGTILSHN-----ALHEIGHALGL 134 +D + + +FD ++W G G A H G Sbjct: 161 PFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGR 220 Query: 135 MH-----PGSYNGGYPVYGVDNDYEND 156 + G G P +Y+ D Sbjct: 221 SYSACTTDGRS-DGLPWCSTTANYDTD 246 Score = 34.2 bits (78), Expect = 0.11 Identities = 16/34 (47%), Positives = 18/34 (52%) Query: 103 NFDKADVWRYGIGKGTILSHNALHEIGHALGLMH 136 NFD W + +G L A HE GHALGL H Sbjct: 359 NFDSDKKWGFCPDQGYSLFLVAAHEFGHALGLDH 392 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.9 bits (98), Expect = 5e-04 Identities = 73/521 (14%), Positives = 147/521 (28%), Gaps = 229/521 (43%) Query: 212 QQKDSPFIQTI---YDS-GGDD----LLDLTL--IGGVKNYIDLNTESWSSIGGYEKNMT 261 Q ++ F + + + DD +L +G Y+ + S +G ++ Sbjct: 32 QLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLG----YV-SSLVEPSKVGQFD---- 81 Query: 262 IAQHTVIESVVGSSGNDVVIGNSANNVFFESS---GNDV------FDGSSGLDT------ 306 V+ + FE+ GND+ + DT Sbjct: 82 ----QVLNLCLT---------------EFENCYLEGNDIHALAAKLLQEN--DTTLVKTK 120 Query: 307 ----FFYYAPSYLYK-IYRFENAIIVYDANEHKQDFLSDVERLRFA--------DQCIDS 353 + A + + N+ + E +L A D + Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-------QL-VAIFGGQGNTDDYFEE 172 Query: 354 VNVKQRSILEYTASY----EDLIQVIGQDVFESMKHFYEFGLSEGRDITFDSYLYLGSYD 409 + R + Y +Y DLI+ + E L + + G Sbjct: 173 L----RDL--YQ-TYHVLVGDLIKFSA-------ETLSE--LIR-TTLDAEKVFTQGL-- 213 Query: 410 DLRNVFGSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAFADAP------DLV 463 ++ ++ + PD +Y+ S P ++ Sbjct: 214 NI------------LEWLEN--PSNT-PD----KDYLLS----------IPISCPLIGVI 244 Query: 464 QVGKDHFS----NFGCEEGRFVTFDSYLYLGSYDDLRNVFGSDRG---AAARHYITHGVK 516 Q+ H+ G G ++ L+ G +G A A + Sbjct: 245 QLA--HYVVTAKLLGFTPGELRSY-----------LKGATGHSQGLVTAVA-------IA 284 Query: 517 EGRNPDAF-----KALE---YIA--SHEDLINAFAD---APDLVQAGKDHFSNFGYEEGR 563 E + ++F KA+ +I +E A+ + P +++ ++ EG Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLEN------NEGV 334 Query: 564 -----SITFNPDLYLTSYDDLWNVFGSDRSAAAQHYIT----HGMKEGRALGIS----GM 610 SI+ +L + + + Q Y+ H + G+ + IS Sbjct: 335 PSPMLSIS---NL---TQEQV------------QDYVNKTNSH-LPAGKQVEISLVNGAK 375 Query: 611 QF------KSVMNLSEKSRD-KADLSLS-----FDHKKVDL 639 +S+ L+ R KA L F +K+ Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416 Score = 38.4 bits (89), Expect = 0.005 Identities = 93/594 (15%), Positives = 164/594 (27%), Gaps = 248/594 (41%) Query: 35 LTTHRLSFDITELNPNAQ----EVARWALGEWSKVVDLTFEET-----SIHSDIKFISSN 85 L L + + + P+ +V L E FE IH+ + Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--------FENCYLEGNDIHA---LAAKL 108 Query: 86 NGYVCTPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPG----SYN 141 T ++ ++ A + Sbjct: 109 LQENDTTLVKTKELIKNYI------------------TARIMAKRPFDKKSNSALFRAVG 150 Query: 142 GG----YPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCA-TPMVSDIVA------ 190 G ++G + ++ YF + + D Y +V D++ Sbjct: 151 EGNAQLVAIFGGQGNTDD---------YF---EELRDL---YQTYHVLVGDLIKFSAETL 195 Query: 191 ---------VQKIYGAPKGSLGNNIYK---IEVQQKDSPFIQTIYDSGGDDLLDLTLIGG 238 +K++ +G L NI + D ++ +I S LIG Sbjct: 196 SELIRTTLDAEKVF--TQG-L--NILEWLENPSNTPDKDYLLSIPIS-------CPLIG- 242 Query: 239 VKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIGNSANNVFFE-SSGNDV 297 I L A + V ++G + ++ + + ++G+ Sbjct: 243 ---VIQL-----------------AHYVVTAKLLGFTPGEL-------RSYLKGATGH-- 273 Query: 298 FDGSSGL---------DTF--FYY----APSYLYKI-YRFENAI--------IVYDANEH 333 S GL D++ F+ A + L+ I R A I+ D+ E+ Sbjct: 274 ---SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330 Query: 334 KQDF----LS--DVERLRFADQCIDSVNVKQRSILEYTASYEDLIQVIGQDVFESMKHFY 387 + LS ++ + + D ++ N + K Sbjct: 331 NEGVPSPMLSISNLTQEQVQDY-VNKTN-----------------SHLPAG-----KQVE 367 Query: 388 EFGLSEGRDITF------DSYLY-LGSYDDLRNVFGSDRGAAARHYITHGVKEGRNPDAF 440 L G S LY L LR A + G+ + R P F Sbjct: 368 -ISLVNGAK-NLVVSGPPQS-LYGLNLT--LRKA-----KAPS------GLDQSRIP--F 409 Query: 441 --KALEYIASHEDL-INA-F-----ADAPDLVQVGKDHFSNFGCEEGRF--------V-- 481 + L++ S+ L + + F A DL+ KD F V Sbjct: 410 SERKLKF--SNRFLPVASPFHSHLLVPASDLIN--KD----LVKNNVSFNAKDIQIPVYD 461 Query: 482 TFDSYLYLGSYDDLRNVFGSDRGAAARHYITHG-VK-EGRNPDAFKALEYIASH 533 TFD GS DLR + I VK E ++ A+H Sbjct: 462 TFD-----GS--DLRVL-SGSISERIVDCIIRLPVKWE-------TTTQFKATH 500 Score = 34.1 bits (78), Expect = 0.11 Identities = 75/506 (14%), Positives = 138/506 (27%), Gaps = 245/506 (48%) Query: 265 HTVIESVVGSSG------NDVV-------------IGNSANNVFFESSGND------VFD 299 H + ++ + +++ +N+ F + G +F Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161 Query: 300 GSSGLDTFF------Y--YAP----------SYLYKIYRF-ENAIIVYDANEHKQDFLSD 340 G D +F Y Y L ++ R +A V+ Q + Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-----TQGL--N 214 Query: 341 VER-LRFADQCIDSVNVKQRSILEYTASYEDLIQV----IG--QDVFESMKHFY----EF 389 + L D +Y S I + IG Q + H+ Sbjct: 215 ILEWLENPSNTPDK---------DYLLS----IPISCPLIGVIQ-----LAHYVVTAKLL 256 Query: 390 GLSEGRDITFDSYLYLGSYDDLRNVF----GSDRG---AAARHYITHGVKEGRNPDAF-- 440 G + G +LR+ G +G A A + E + ++F Sbjct: 257 GFTPG---------------ELRSYLKGATGHSQGLVTAVA-------IAETDSWESFFV 294 Query: 441 ---KALE---YIA--SHEDLINAFAD---APDLVQVGKDHFSNFGCEEGR---------- 479 KA+ +I +E A+ + P +++ ++ EG Sbjct: 295 SVRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLEN------NEGVPSPMLSISNL 344 Query: 480 -------FVT-FDSYL------YLGSYDDLRNVFGSDRGAAARHYITHG----------- 514 +V +S+L + L N A++ + G Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS----LVN--------GAKNLVVSGPPQSLYGLNLT 392 Query: 515 ---VKEGRNPDA----F--KALEYIASHEDL-INA-F-----ADAPDLVQAGKDHFSNFG 558 K D F + L++ S+ L + + F A DL+ Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKF--SNRFLPVASPFHSHLLVPASDLI---NKDL---- 443 Query: 559 YEEGRSITFNP-DLYLTSYD-----DLWNVFGS--------------DRSAA----AQHY 594 +++FN D+ + YD DL + GS A H Sbjct: 444 --VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501 Query: 595 I-------------THGMKEGRALGI 607 + TH K+G G+ Sbjct: 502 LDFGPGGASGLGVLTHRNKDGT--GV 525 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 41.7 bits (97), Expect = 5e-04 Identities = 113/565 (20%), Positives = 202/565 (35%), Gaps = 160/565 (28%) Query: 149 VDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYK 208 V ND +SF+ ++ ++ + ++ +S G TP+ G+ ++ Sbjct: 1071 VQNDILQESFINTMSAWV---NMLLISSSGPIKTPV---------------GACATSVES 1112 Query: 209 IEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYE-KNMTIAQHTV 267 +++ ++TI SG + ++GG Y D E G +E NM +T+ Sbjct: 1113 VDIG------VETIL-SGK---ARICIVGG---YDDFQEE-----GSFEFGNMKATSNTL 1154 Query: 268 IESVVGSSGNDVV-IGNSANNVFFESSGNDV-----FDGSSGLDTFFY----YAPSYLYK 317 E G + ++ + N F E+ G + D + + Y A + K Sbjct: 1155 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK 1214 Query: 318 IYRFENAI---IVYDANEHKQDFLSDVERLRFADQCIDSVNVKQRSILEYTASYEDLIQV 374 I R A I+ A EH +++A ++ + ++R ++ A +D ++ Sbjct: 1215 IGRSVPAPGKGILTTAREHHSS-------VKYASPNLN-MKYRKRQLVTREAQIKDWVE- 1265 Query: 375 IGQDVFESMK---------HFYEFGLSEGRDITFDSYLYLGSYDDLRNVFGSD------- 418 + E++K EF L R+I ++ L + + +G+D Sbjct: 1266 ---NELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRA---AQQQWGNDFYKRDPR 1319 Query: 419 ----RGAAARHYIT---------HGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQV 465 RGA A + +T HG N N A ++++ Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGTSTKANDK---------------NESATINEMMK- 1363 Query: 466 GKDHFSNFGCEEGRFV--TFDSYLYLGSYDDLRNVFGSDRGAA-------ARHYITHGVK 516 + G EG V F +L G +GAA A + G+ Sbjct: 1364 ------HLGRSEGNPVIGVFQKFLT-----------GHPKGAAGAWMMNGALQILNSGII 1406 Query: 517 EG-RNPD----AFKALEYIASHEDLINAFADAPDLVQAGKDHFSNFGYEEGRSITFNPD- 570 G RN D + EY+ + D V+A FG + G++I +PD Sbjct: 1407 PGNRNADNVDKILEQFEYVLYPSKTLKT-----DGVRAVSITSFGFGQKGGQAIVVHPDY 1461 Query: 571 LYLTSYDDLWNVFG---SDRSAAAQHYITHGMKEGRALGISGMQFKSVMNLSEK------ 621 LY +D +N + S R +A + +GM + L +S L E Sbjct: 1462 LYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNK-LFVSKEHAPYTDELEEDVYLDPL 1520 Query: 622 ---SRDKADLSLSFDHKKVDLYTDY 643 S+DK SL+F+ K + Y Sbjct: 1521 ARVSKDKKSGSLTFNSKNIQSKDSY 1545 >1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Length = 421 Score = 41.2 bits (96), Expect = 8e-04 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 33/101 (32%) Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMH---PGSYNGGYPVYGVDNDYENDS 157 N+D W + +G L A H+ GHA+GL H PG+ P+Y ++ Sbjct: 347 TANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALM--APIYTYTKNFR--- 401 Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP 198 + QD DI +Q++YGA Sbjct: 402 ---------LSQD----------------DIKGIQELYGAS 417 Score = 35.0 bits (80), Expect = 0.054 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 26/152 (17%) Query: 37 THRLSFDITELNPNAQE-VARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92 T+R+ +L+P + A WS V L F I F +G Sbjct: 94 TYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG--DGY 151 Query: 93 RYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGS 139 +D + + +FD ++W G G + G+A G Sbjct: 152 PFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEG------QVVRVKYGNADGEYCKFP 205 Query: 140 YNG-GYPVYGVDNDYENDSFLTSVMSYFMPQD 170 + G + +D FL +Y +D Sbjct: 206 FLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKD 237 >2qub_A Extracellular lipase; beta roll, alpha/beta hydrolase, helical hairpin; 1.80A {Serratia marcescens} PDB: 2qua_A Length = 615 Score = 39.7 bits (92), Expect = 0.002 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 223 YDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIG 282 + +D + ++ GG + + + + + G++GND +IG Sbjct: 461 SWLIFNKEVDHQVTAAGLKSDSGLKAYAAATGG-DGDDVLQARSHDAWLFGNAGNDTLIG 519 Query: 283 NS-ANNVFFESSGNDVFDGSSGLDTFFYYA 311 ++ N F SG+D+ G +TF + Sbjct: 520 HAGGNLTFVGGSGDDILKGVGNGNTFLFSG 549 Score = 39.3 bits (91), Expect = 0.003 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%) Query: 255 GYEKNMTIAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYAPSY 314 + I + + G GND + G +++F ++ G ++ G G + F Sbjct: 367 THSGPTFIIGSDGNDLIKGGKGNDYLEGRDGDDIFRDAGGYNLIAGGKGHNIFDTQQALK 426 Query: 315 LYKIYRFENAIIVYDANEHKQDFLSDVERLRFADQCIDSVNVKQRSILEYTASYEDLIQV 374 ++ N + + DA I ++ K+ S L + + + Sbjct: 427 NTEVAYDGNTLYLRDAKGGITLADD-----------ISTLRSKETSWLIFNKEVDHQVTA 475 Query: 375 IGQDVFESMKHFYEFGLSEGRDITF----DSYLYLGSYDD 410 G +K + +G D+ D++L+ + +D Sbjct: 476 AGLKSDSGLKAYAAATGGDGDDVLQARSHDAWLFGNAGND 515 Score = 39.3 bits (91), Expect = 0.003 Identities = 16/107 (14%), Positives = 34/107 (31%) Query: 203 GNNIYKIEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTI 262 + EV + G D++ + + + + + Sbjct: 422 QQALKNTEVAYDGNTLYLRDAKGGITLADDISTLRSKETSWLIFNKEVDHQVTAAGLKSD 481 Query: 263 AQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFY 309 + + G G+DV+ S + F ++GND G +G + F Sbjct: 482 SGLKAYAAATGGDGDDVLQARSHDAWLFGNAGNDTLIGHAGGNLTFV 528 Score = 32.7 bits (74), Expect = 0.30 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 271 VVGSSGNDVVIGNSANNVFFES--SGNDVFDGSSGLDTFFY 309 VG SG+D++ G N F S G D G + D + Sbjct: 527 FVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNASDKLVF 567 >2agm_A Poly(beta-D-mannuronate) C5 epimerase 4; parallel beta-roll, isomerase; NMR {Azotobacter vinelandii} Length = 167 Score = 37.3 bits (86), Expect = 0.010 Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 273 GSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYAPSYLYKIYRFENAIIVYD 329 G SG D + G + +++ +G D G +G DTF + A Y+ ++ D Sbjct: 18 GGSGADRLDGGAGDDILDGGAGRDRLSGGAGADTFVFSAREDSYRTDTAVFNDLILD 74 Score = 33.1 bits (75), Expect = 0.19 Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 275 SGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYA 311 S + ++G ++ SG D DG +G D A Sbjct: 2 SDGEPLVGGDTDDQLQGGSGADRLDGGAGDDILDGGA 38 >3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Length = 199 Score = 34.2 bits (78), Expect = 0.096 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 10/97 (10%) Query: 45 TELNPNAQEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYDSRYFMEINF 104 E + N + V A+ + + F SI +D I + +G + ++ Sbjct: 28 GEFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIENKDGCYSAIGR-TGGKQVVSL 86 Query: 105 DKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYN 141 ++ GI A HE+ HALG H S + Sbjct: 87 NRKGCVYSGI---------AQHELNHALGFYHEQSRS 114 >3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, zinc, disulfide bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235 Score = 33.9 bits (77), Expect = 0.11 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 11/97 (11%) Query: 42 FDITELNPNAQEVARWALGEWSKVVDLTFEETSIHSD-IKFISSNNGYVCTPRYDSRYFM 100 + ++ Q + E + + F + SD ++ +S +G S Sbjct: 51 YTFAGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWSYVGRISGA-Q 109 Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHP 137 +++ G + LH + HA+G H Sbjct: 110 QVSL---------QANGCVYHGTILHALMHAIGFYHE 137 >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631 Score = 33.5 bits (76), Expect = 0.15 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNG-GYPVYGVDNDYE 154 N+D W + +G L A H GHA+GL H P+Y ++ Sbjct: 349 TANYDDDRKWGFCPDQGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFR 403 Score = 28.1 bits (62), Expect = 6.7 Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 38/166 (22%) Query: 37 THRLSFDITELNPNAQEVA-RWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92 T+R+ +L+P + A A WS V L F I F +G Sbjct: 96 TYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG--DGY 153 Query: 93 RYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGS 139 +D + + +FD ++W G G ++ + G P Sbjct: 154 PFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGE--GQVVRVKYGNADGEY--CKFPFL 209 Query: 140 YNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMM-----DASFGYC 180 +NG E +S + S S D +G+C Sbjct: 210 FNG----------KEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFC 245 >3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A Length = 201 Score = 33.2 bits (75), Expect = 0.17 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 11/93 (11%) Query: 46 ELNPNAQEVARWALGEWSKVVDLTFEETSIHSDIK-FISSNNGYVCTPRYDSRYFMEINF 104 + + V R A+ W K +TF E + F G I+ Sbjct: 22 NFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAIS- 80 Query: 105 DKADVWRYGIGKGTILSHNALHEIGHALGLMHP 137 IGK +HE+GH +G H Sbjct: 81 ---------IGKNCDKFGIVVHELGHVVGFWHE 104 >3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Methanocorpusculum labreanum} Length = 210 Score = 31.5 bits (71), Expect = 0.62 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 32/131 (24%) Query: 19 RDQYWSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIHSD 78 R+QY + + + R I + E K++ +T D Sbjct: 48 RNQYDAVKVLLK---LDMFRRRMPQIFKPADMDLEFYNKFNHLHEKILLVT------PGD 98 Query: 79 IKFISSNNGYVC-------------TPRYDSRYFMEINFDKADVWRYGIGKGTILSHNAL 125 + + + +V R + ++ + D I K Sbjct: 99 L-YEPLAD-FVFGLAYPKLGVAIVSPHRLQNEFYGKYADD--SALIDRIVKE------GA 148 Query: 126 HEIGHALGLMH 136 HEIGH GL H Sbjct: 149 HEIGHLFGLGH 159 >2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1} Length = 109 Score = 31.1 bits (70), Expect = 0.80 Identities = 9/59 (15%), Positives = 18/59 (30%) Query: 4 IKPVYTTERIADHLLRDQYWSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEW 62 ++P+ E L+ N + Y + R+ + + V L E Sbjct: 38 VQPISQEEYYKAQQLQTPIGYNIYTPYDDRIDKKMRVIYRGKIVTFIGDPVDLSGLQEI 96 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A* 2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A* Length = 456 Score = 30.4 bits (67), Expect = 1.1 Identities = 27/235 (11%), Positives = 54/235 (22%), Gaps = 14/235 (5%) Query: 55 ARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYDSRYFMEINFDKADVWRYGI 114 +K+ + + +DI ++ G + R + Sbjct: 177 GADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLE 236 Query: 115 GKGTILSHNALHEIGHALGLMH----PGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQD 170 L G L G+ G V N + Sbjct: 237 RVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGC 296 Query: 171 SMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYKIEVQQKDSPFIQTIYDSGGDDL 230 + ++ G +V + A G + + Sbjct: 297 VIKNSVIGDDCEISPYTVVEDANLAAACTI--GPFARLRPGAELLEGAHVGNFVEMKKAR 354 Query: 231 LDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIGNSA 285 L G Y+ + IG N+ I T+ + G++ +IG+ Sbjct: 355 LGKGSKAGHLTYLGD-----AEIG---DNVNIGAGTITCNYDGANKFKTIIGDDV 401 >2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri} Length = 195 Score = 29.2 bits (65), Expect = 2.8 Identities = 7/13 (53%), Positives = 8/13 (61%) Query: 124 ALHEIGHALGLMH 136 HE+GH GL H Sbjct: 143 LTHELGHTFGLGH 155 >2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initiative; 2.09A {Enterococcus faecium DO} SCOP: a.80.1.2 PDB: 2qw6_A Length = 204 Score = 29.1 bits (65), Expect = 3.1 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%) Query: 500 GSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQAGKDHFSNFGY 559 GSD AA HY+ V+ G + + + +ED+ A G Sbjct: 27 GSDVDAAL-HYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 Query: 560 EEGRSITFNPDLYLTSYDDLWNVFGSDRSAAAQHYITHGMKE 601 E R + + L S +S +A + + + Sbjct: 85 PEARIPLADVVVDLCL---------SPKSNSAYMALDAALAD 117 >1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188 Score = 28.9 bits (64), Expect = 3.6 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 411 LRNVFGSDRGAAARHYITHGVKEGRNPD----AFKALEYIASHEDLINA 455 R VF D R I + + GRN + +AL+++ H ++ A Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPA 175 Score = 28.9 bits (64), Expect = 3.6 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 495 LRNVFGSDRGAAARHYITHGVKEGRNPD----AFKALEYIASHEDLINA 539 R VF D R I + + GRN + +AL+++ H ++ A Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPA 175 >3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2 Length = 213 Score = 28.7 bits (64), Expect = 3.8 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 14/127 (11%) Query: 416 GSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQVGKDHFSNFGC 475 GSD A +++ + V+ G +P+ I++ ED+ A +A +VQ D F G Sbjct: 48 GSDPDATL-YWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 Query: 476 EEGRFVTFDSYLYLGS-------------YDDLRNVFGSDRGAAARHYITHGVKEGRNPD 522 EG F + LYL + ++ S ++ ++ + Sbjct: 107 PEGLFFLSQASLYLAISPKSNSTKSIFKAMEAIKATNVSLVPNHLKNNASNYLNPHNYQG 166 Query: 523 AFKALEY 529 + EY Sbjct: 167 KWLQQEY 173 >3h9r_A Activin receptor type-1; structural genomics, structural genomics consortium, SGC, ATP-binding, disease mutation, glycoprotein; HET: TAK PG4; 2.35A {Homo sapiens} Length = 330 Score = 28.6 bits (63), Expect = 4.9 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%) Query: 64 KVVDLTFEETSIHSDIKFISSNNGYVCTPRY-------DSRYFMEINFD-KADVWRYGI 114 + DL S + NN V T RY ++ + + D+W +G+ Sbjct: 182 CIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGL 240 >1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A Length = 132 Score = 28.6 bits (64), Expect = 5.1 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 21/73 (28%) Query: 113 GIGKGTIL-------SHNAL----HEIGHALGLMHPGSYN--------GGYPVYGVDNDY 153 G G+G I +++ HE GH LGL P Y GG P N Y Sbjct: 59 GHGRGYIFLDYQQNQQYDSTRVTAHETGHVLGL--PDHYQGPCSELMSGGGPGPSCTNPY 116 Query: 154 ENDSFLTSVMSYF 166 N + V + + Sbjct: 117 PNAQERSRVNALW 129 >3mmp_G RNA-directed RNA polymerase beta chain; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Enterobacteria phage qbeta} Length = 589 Score = 28.3 bits (62), Expect = 5.3 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 481 VTFDSYLYLGSYDDLRNVFGSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAF 540 + + L L +DL +G + I+ + PD F+ + Y+ + ++++ + Sbjct: 23 IEVEGNLALSIANDLLLAYGQSPFNSEAECISFSPRFDGTPDDFR-INYLKA--EIMSKY 79 Query: 541 ADAPDLVQAGKDHFSNFGYEEGRSITFNPDLYLTSYDDLWNVFGSDR 587 D + + F E N LY Y + +N + Sbjct: 80 DDFSLGIDTEAVAWEKFLAAEAECALTNARLYRPDYSEDFNFSLGES 126 >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 Score = 28.3 bits (62), Expect = 6.5 Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 368 YEDL-IQVIGQDVFESMKHFYEFGLSE 393 Y ++ ++V G DV + ++HF L + Sbjct: 39 YNNIPVKVTGSDVPQPIQHFTSADLRD 65 >2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Score = 27.8 bits (61), Expect = 9.2 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 519 RNPDAFKALEYIASHEDLINAFA----DAPDLVQAGKDHFSNFGYEEGR-SITFNPDLYL 573 + F+ L I I ++ D +L Q N +G+ +NP L L Sbjct: 377 VSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCL 436 Query: 574 TSYDDLWNVFGS 585 + + V G+ Sbjct: 437 SEIHKMEEVSGT 448 >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* Length = 291 Score = 27.3 bits (60), Expect = 9.8 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 64 KVVDLTFEETSIHSDIKFISSNNGYVCTPRY-DSRYFMEINFD-KADVWRYGIGKGTILS 121 K+ D ++ +D + + ++ F K+DVW +G+ S Sbjct: 157 KISDFGLS-KALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 215 Query: 122 H 122 + Sbjct: 216 Y 216 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.137 0.412 Gapped Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 6,097,086 Number of extensions: 295965 Number of successful extensions: 1075 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1004 Number of HSP's successfully gapped: 87 Length of query: 665 Length of database: 5,693,230 Length adjustment: 99 Effective length of query: 566 Effective length of database: 3,293,074 Effective search space: 1863879884 Effective search space used: 1863879884 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.5 bits)