RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780384|ref|YP_003064797.1| serralysin [Candidatus
Liberibacter asiaticus str. psy62]
(665 letters)
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 132 bits (332), Expect = 3e-31
Identities = 93/339 (27%), Positives = 149/339 (43%), Gaps = 34/339 (10%)
Query: 3 NIKPVYTTERIADHLLRDQY-WSNYFIRYKPDVLTTHRLS---------FDITELNPNAQ 52
N K Y+ ++ A + R+ W+ + K LT L + N
Sbjct: 43 NGKTSYSIDQAAAQITRENVSWNGTNVFGKSANLTFKFLQSVSSIPSGDTGFVKFNAEQI 102
Query: 53 EVARWALGEWSKVVDLTFEETSIHS--DIKFISSNNGYVCTPRYDSRYFM---------- 100
E A+ +L WS V +LTF E + + +I F + Y ++ +
Sbjct: 103 EQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAG 162
Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDN-DYENDSFL 159
++ G HEIGHALGL HPG YN G ++ Y DS+
Sbjct: 163 SSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQ 222
Query: 160 TSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPK----------GSLGNNIYKI 209
S+MS++ ++ D + Y PM+ DI A+Q++YGA + +
Sbjct: 223 FSIMSFWGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFY 282
Query: 210 EVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIE 269
I +++D+GG D D + I+LN S+S +GG + N++IA IE
Sbjct: 283 TATDSSKALIFSVWDAGGTDTFDFSGYSN-NQRINLNEGSFSDVGGLKGNVSIAHGVTIE 341
Query: 270 SVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308
+ +G SGND+++GNSA+N+ +GNDV G +G DT +
Sbjct: 342 NAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLY 380
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease;
1.64A {Pseudomonas aeruginosa PAO1} SCOP: b.80.7.1
d.92.1.6 PDB: 1jiw_P 1akl_A
Length = 479
Score = 131 bits (330), Expect = 5e-31
Identities = 91/345 (26%), Positives = 147/345 (42%), Gaps = 40/345 (11%)
Query: 3 NIKPVYTTERIADHLLRDQY-WSN----------YFIRYKPDVLTTHRLSFDIT------ 45
N P YT ++ A+ +LR+Q W Y KP+ +
Sbjct: 34 NGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGK 93
Query: 46 --ELNPNAQEVARWALGEWSKVVDLTFEETSI--HSDIKFISSNN-----GYVCTPRYDS 96
+ Q A+ +L WS V ++ F + D+ F + ++ + P
Sbjct: 94 FSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPD 153
Query: 97 RYFMEINFDKADVW--RYGIGKGTILSHNALHEIGHALGLMHPGSYNGGY-PVYGVDNDY 153
+ + + G HEIGH LGL HPG YN G D Y
Sbjct: 154 ALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATY 213
Query: 154 ENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP-KGSLGNNIYKIEVQ 212
D+ SVMSY+ Q++ D Y + P++ DI A+QK+YGA G+ +Y
Sbjct: 214 AEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSN 273
Query: 213 QK---------DSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIA 263
+ S + +++D+GG+D LD + I+LN ++ S +GG + N++IA
Sbjct: 274 TERDFYSATSSSSKLVFSVWDAGGNDTLDFS-GFSQNQKINLNEKALSDVGGLKGNVSIA 332
Query: 264 QHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308
+E+ +G SG+D++IGN NV +GND+ G G D +
Sbjct: 333 AGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLW 377
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 130 bits (327), Expect = 1e-30
Identities = 98/341 (28%), Positives = 145/341 (42%), Gaps = 36/341 (10%)
Query: 3 NIKPVYTTERIADHLLRDQY-WSN----------YFIRYKPDVLTTHRLSFDITELNPNA 51
N KP +T +++AD L R W + Y P V R ++ +
Sbjct: 26 NGKPSFTVDQVADQLTRSGASWHDLNNDGVINLTYTFLTAPPVGYASRGLGTFSQFSALQ 85
Query: 52 QEVARWALGEWSKVVDLTFEETS------IHSDIKFISSNNG---YVCTPRYDSRYFMEI 102
+E A+ +L W+ V +TF E H S++NG + P +
Sbjct: 86 KEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWY 145
Query: 103 NFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYG-VDNDYENDSFLTS 161
+K G+G HEIGH LGL HPG YN G D Y D+ S
Sbjct: 146 LINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVYAEDTRAYS 205
Query: 162 VMSYFMPQDS----MMDASFGYCATPMVSDIVAVQKIYGAP----------KGSLGNNIY 207
VMSY+ +++ Y + P++ DI AVQK+YGA + +
Sbjct: 206 VMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGANLETRADDTVYGFNSTADRD 265
Query: 208 KIEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTV 267
I +++D GG+D LD + I+L S+S +GG N++IAQ
Sbjct: 266 FYSATSSTDKLIFSVWDGGGNDTLDFS-GFSQNQKINLTAGSFSDVGGMTGNVSIAQGVT 324
Query: 268 IESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308
IE+ +G SGND++IGN A NV +GND+ G G D +
Sbjct: 325 IENAIGGSGNDLLIGNDAANVLKGGAGNDIIYGGGGADVLW 365
>1sat_A Serratia protease; parallel beta helix, parallel beta roll,
hydrolase (serine protease); 1.75A {Serratia marcescens}
SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A 1smp_A 1srp_A
Length = 471
Score = 96.2 bits (238), Expect = 2e-20
Identities = 90/350 (25%), Positives = 139/350 (39%), Gaps = 44/350 (12%)
Query: 3 NIKPVYTTERIADHLLRD-QYWSNYFIRYKPDVLTTHRLSF--------------DITEL 47
N K ++ E+ + R+ Q W+ Y + +P LT SF +++
Sbjct: 25 NGKDSFSNEQAGLFITRENQTWNGYKVFGQPVKLT---FSFPDYKFSSTNVAGDTGLSKF 81
Query: 48 NPNAQEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYD------------ 95
+ Q+ A+ +L W+ V ++TF E + N YD
Sbjct: 82 SAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFLPNT 141
Query: 96 ----SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPG-SYNGGYPVYGVD 150
+ ++ HEIGHALGL HPG G D
Sbjct: 142 IWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYAD 201
Query: 151 NDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYKIE 210
Y D+ S+MSY+ ++ D Y A P++ DI A+Q +YGA + +
Sbjct: 202 VTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTRTGDTVYGF 261
Query: 211 VQQKDSPFIQTIYDSGGDDLLDLTLIGG---------VKNYIDLNTESWSSIGGYEKNMT 261
F+ T +S G I+LN +S+S +GG + N++
Sbjct: 262 NSNTGRDFLSTTSNSQKVIFAAWDAGGNDTFDFSGYTANQRINLNEKSFSDVGGLKGNVS 321
Query: 262 IAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYA 311
IA IE+ +G SGNDV++GN+ANNV +GNDV G G D + A
Sbjct: 322 IAAGVTIENAIGGSGNDVIVGNAANNVLKGGAGNDVLFGGGGADELWGGA 371
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 76.4 bits (187), Expect = 2e-14
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 41/185 (22%)
Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEET-SIHSDIKFISSNNG 87
R++ LT L F + ++ AL WS+V LTF E +DI +
Sbjct: 8 RWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYW 67
Query: 88 YVCTPRYDSRYF-------------MEINFDKADVWRYGIGKGTILSHNALHEIGHALGL 134
+ +D +++FD + W G +GT L A HE GH LGL
Sbjct: 68 HGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGL 127
Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194
H + ++MS F +F Y + D +Q +
Sbjct: 128 QHTTAAK-------------------ALMSPF--------YTFRYPLSLSPDDRRGIQHL 160
Query: 195 YGAPK 199
YG P+
Sbjct: 161 YGRPQ 165
>1mmq_A Matrilysin; metalloprotease; HET: RRS; 1.90A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1mmp_A* 1mmr_A* 2ddy_A*
Length = 170
Score = 70.6 bits (172), Expect = 9e-13
Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 39/187 (20%)
Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIHS-DIKFISSNNG 87
++ V+T +S+ + + AL W K + L F + + DI +
Sbjct: 9 KWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGA 68
Query: 88 YVCTPRYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGL 134
+ + +D + + +FD+ + W G G + A HE+GH+LG+
Sbjct: 69 HGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGM 128
Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194
H N +VM DI +QK+
Sbjct: 129 GHSSDPN-------------------AVMYPTYGNGD------PQNFKLSQDDIKGIQKL 163
Query: 195 YGAPKGS 201
YG S
Sbjct: 164 YGKRSNS 170
>1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix
metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A
{Homo sapiens} SCOP: d.92.1.11 PDB: 1hov_A*
Length = 161
Score = 66.0 bits (160), Expect = 3e-11
Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 41/161 (25%)
Query: 52 QEVARWALGEWSKVVDLTFEET-SIHSDIKFISSNNGYVCTPRYD-------------SR 97
+ A WS V L F +DI + +D +
Sbjct: 27 DDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTG 86
Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157
+ +FD ++W G G G L A HE GHA+GL H
Sbjct: 87 VGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLEHSQDPG---------------- 130
Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP 198
++M+ ++ DI +Q++YGA
Sbjct: 131 ---ALMAPIY--------TYTKNFRLSQDDIKGIQELYGAS 160
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A {Tannerella
forsythia} PDB: 2xs3_A
Length = 167
Score = 62.1 bits (150), Expect = 3e-10
Identities = 35/166 (21%), Positives = 52/166 (31%), Gaps = 47/166 (28%)
Query: 52 QEVARWALGEWSKVVDLTFEETSIHSD----IKFISSNNGYVC--------------TPR 93
+ R A WS L+F + + IK+ N+G P
Sbjct: 30 ENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPP 89
Query: 94 YDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDY 153
Y ++FD + W G G L A HEIGH LG+ H
Sbjct: 90 AGGNYAGHLHFDDDENWSIN-GSGIDLITVAAHEIGHLLGIEHS---------------- 132
Query: 154 ENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPK 199
+ +++M + G D +AV +YG P
Sbjct: 133 ---NVSSALMYPYYT---------GIKRQLDNDDCLAVWDLYGYPF 166
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 61.4 bits (148), Expect = 6e-10
Identities = 36/181 (19%), Positives = 54/181 (29%), Gaps = 39/181 (21%)
Query: 35 LTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIH-SDIKFISSNNGYVCTPR 93
LT +++ AL W +V LTF +DI + +
Sbjct: 97 LTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYP 156
Query: 94 YD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSY 140
+D + +FD + W GT L A HEIGH+LGL H +
Sbjct: 157 FDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDT-TGTNLFLVAAHEIGHSLGLFHSANT 215
Query: 141 NGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKG 200
++M + DI +Q +YG P
Sbjct: 216 E-------------------ALMYPLYH-----SLTDLTRFRLSQDDINGIQSLYGPPPD 251
Query: 201 S 201
S
Sbjct: 252 S 252
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens}
SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A*
1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A*
1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A*
1ciz_A* 1caq_A* ...
Length = 173
Score = 61.0 bits (147), Expect = 8e-10
Identities = 37/185 (20%), Positives = 55/185 (29%), Gaps = 44/185 (23%)
Query: 36 TTHRLSFDITELNPN-----AQEVARWALGEWSKVVDLTFEE-TSIHSDIKFISSNNGYV 89
L++ I P+ AL W +V LTF +DI + +
Sbjct: 11 RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHG 70
Query: 90 CTPRYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMH 136
+D + +FD + W GT L A HEIGH+LGL H
Sbjct: 71 DFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDT-TGTNLFLVAAHEIGHSLGLFH 129
Query: 137 PGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196
+ ++M + DI +Q +YG
Sbjct: 130 SANTE-------------------ALMYPLYH-----SLTDLTRFRLSQDDINGIQSLYG 165
Query: 197 APKGS 201
P S
Sbjct: 166 PPPDS 170
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 58.3 bits (140), Expect = 5e-09
Identities = 31/182 (17%), Positives = 49/182 (26%), Gaps = 40/182 (21%)
Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNNG 87
+++ LT ++ + + A WS L F S +DI
Sbjct: 8 KWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRD 67
Query: 88 YVCTPRYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGL 134
+ +D + +FD + W L A HE GH+LGL
Sbjct: 68 HGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTN-TSANYNLFLVAAHEFGHSLGL 126
Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194
H ++M + DI +Q I
Sbjct: 127 AHSSDPG-------------------ALMYPN------YAFRETSNYSLPQDDIDGIQAI 161
Query: 195 YG 196
YG
Sbjct: 162 YG 163
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
Length = 168
Score = 57.9 bits (139), Expect = 6e-09
Identities = 32/163 (19%), Positives = 48/163 (29%), Gaps = 42/163 (25%)
Query: 52 QEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNNGYVCTPRYD-------------SR 97
A WS V LTF + S +DI + +D
Sbjct: 30 DHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPG 89
Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157
+ +FD+ + W + L A HE+GH+LGL H
Sbjct: 90 IGGDAHFDEDERWTN-NFREYNLHRVAAHELGHSLGLSHSTDIG---------------- 132
Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKG 200
++M +F DI +Q IYG +
Sbjct: 133 ---ALMYPSY--------TFSGDVQLAQDDIDGIQAIYGRSQN 164
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 54.0 bits (129), Expect = 1e-07
Identities = 35/165 (21%), Positives = 50/165 (30%), Gaps = 44/165 (26%)
Query: 52 QEVARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTPRYD-----------SR 97
A WS V LTF + S I F+ ++
Sbjct: 112 DHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPG 171
Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNG-GYPVYGVDNDYEND 156
+ +FD+ + W + L A HE+GH+LGL H YP Y D +
Sbjct: 172 IGGDAHFDEDERWTN-NFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQ-- 228
Query: 157 SFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGS 201
+ QD DI +Q IYG +
Sbjct: 229 ----------LAQD----------------DIDGIQAIYGRSQNP 247
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 53.8 bits (128), Expect = 1e-07
Identities = 28/158 (17%), Positives = 39/158 (24%), Gaps = 38/158 (24%)
Query: 52 QEVARWALGEWSKVVDLTFEETS-------------IHSDIKFISSNNGYVCTPRYDSRY 98
+ AL WS V L+F + H D G +
Sbjct: 27 DKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEG 86
Query: 99 FMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSF 158
G L A HE GHALGL H +
Sbjct: 87 LGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPS----------------- 129
Query: 159 LTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196
++M + Y D+ +Q +YG
Sbjct: 130 --ALMYPTYKYKN------PYGFHLPKDDVKGIQALYG 159
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase/inhibitor), acetohydroxamic acid,
hydrolase; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A*
3f18_A* 3f19_A* 3f1a_A* 2wo9_A* 2wo8_A* 2woa_A* ...
Length = 159
Score = 53.4 bits (127), Expect = 2e-07
Identities = 33/159 (20%), Positives = 45/159 (28%), Gaps = 40/159 (25%)
Query: 52 QEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRY--------------DSR 97
R A WS V L F + + + G S
Sbjct: 27 DYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSG 86
Query: 98 YFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157
+ +FD+ + W G GT L A+HEIGH+LGL H
Sbjct: 87 IGGDAHFDEDEFWTTHSG-GTNLFLTAVHEIGHSLGLGHSSDPK---------------- 129
Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196
+VM DI +Q +YG
Sbjct: 130 ---AVMFPT------YKYVDINTFRLSADDIRGIQSLYG 159
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV
collagenase) (92...; hydrolase, S1-prime pocket; HET:
4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A*
2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 52.2 bits (124), Expect = 4e-07
Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 41/158 (25%)
Query: 52 QEVARWALGEWSKVVDLTFEET-SIHSDIKFISSNNGYVCTPRYDSRY------------ 98
+ A WS V LTF S +DI + +D +
Sbjct: 29 DDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPG 88
Query: 99 -FMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDS 157
+ +FD ++W G G+G L A H+ GHALGL H
Sbjct: 89 IQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPE---------------- 132
Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIY 195
++M F D+ ++ +Y
Sbjct: 133 ---ALMYPMY--------RFTEGPPLHKDDVNGIRHLY 159
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on
PAIR of basic residue disulfide bond, membrane,
metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M
Length = 181
Score = 51.9 bits (123), Expect = 4e-07
Identities = 30/174 (17%), Positives = 44/174 (25%), Gaps = 49/174 (28%)
Query: 52 QEVARWALGEWSKVVDLTFEETSIHS-----------DIKFISSNNGYVC---------- 90
E R A W L F E I F +G
Sbjct: 30 YEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLA 89
Query: 91 ---TPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVY 147
P + + + R G + A+HE+GHALGL H +
Sbjct: 90 HAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPS------ 143
Query: 148 GVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGS 201
++M+ F D +Q++YG G
Sbjct: 144 -------------AIMAPFYQWMD------TENFVLPDDDRRGIQQLYGGESGF 178
>1bqq_M CDMT1-MMP, membrane-type matrix metalloproteinase, MMP-14; matrix
metalloproteinase, tissue inhibitor of
metalloproteinases, proteinase complex; 2.75A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1buv_M
Length = 174
Score = 51.9 bits (123), Expect = 4e-07
Identities = 29/170 (17%), Positives = 43/170 (25%), Gaps = 49/170 (28%)
Query: 52 QEVARWALGEWSKVVDLTFEETSIHSD-----------IKFISSNNGYVC---------- 90
E R A W L F E I F +G
Sbjct: 28 YEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLA 87
Query: 91 ---TPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVY 147
P + + + R G + A+HE+GHALGL H +
Sbjct: 88 HAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPS------ 141
Query: 148 GVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGA 197
++M+ F D +Q++YG
Sbjct: 142 -------------AIMAPFYQWMD------TENFVLPDDDRRGIQQLYGG 172
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 51.5 bits (122), Expect = 7e-07
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 16/120 (13%)
Query: 37 THRLSFDITELNPNAQ-EVARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92
T+R++ ++N R A WS V L F + + + F +G
Sbjct: 10 TYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAF 69
Query: 93 RYDSRYFM-----------EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYN 141
+ +FD+ + W G GT L A+HEIGH+LGL H
Sbjct: 70 DGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG-GTNLFLTAVHEIGHSLGLGHSSDPK 128
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 49.7 bits (117), Expect = 2e-06
Identities = 36/172 (20%), Positives = 50/172 (29%), Gaps = 48/172 (27%)
Query: 48 NPNAQEVARWALGEWSKVVDLTFEET----------SIHSDIKFISSNNGYVCT------ 91
+P ++ R A W V LTFEE + I F S +G
Sbjct: 22 DPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGG 81
Query: 92 -------PRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGY 144
P + D+ G L A+HE+GHALGL H
Sbjct: 82 FLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPT--- 138
Query: 145 PVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYG 196
++M+ F D+ +QKIYG
Sbjct: 139 ----------------AIMAPF------YQYMETDNFKLPNDDLQGIQKIYG 168
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 1eub_A*
1xuc_A* 1xud_A* 1xur_A* 3elm_A* 2ow9_A* 2ozr_A* 2d1n_A*
1fls_A* 1fm1_A* 1ztq_A* 2e2d_A 2pjt_A* 1cxv_A*
Length = 168
Score = 49.5 bits (117), Expect = 2e-06
Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 40/184 (21%)
Query: 29 RYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSI-HSDIKFISSNNG 87
++ LT +++ + ++ + A WS V L F +DI
Sbjct: 9 KWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKE 68
Query: 88 YVCTPRYDSRYFME-------------INFDKADVWRYGIGKGTILSHNALHEIGHALGL 134
+ +D + +FD D KG L A HE GH+LGL
Sbjct: 69 HGDFYPFDGPSGLLAHAFPPGPNYGGDAHFD-DDETWTSSSKGYNLFLVAAHEFGHSLGL 127
Query: 135 MHPGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKI 194
H ++M D+ +Q +
Sbjct: 128 DHSKDPG-------------------ALMFPIYTYTGKSH------FMLPDDDVQGIQSL 162
Query: 195 YGAP 198
YG
Sbjct: 163 YGPG 166
>2z8x_A Lipase; beta roll, calcium binding protein, RTX protein, hydrolase;
1.48A {Pseudomonas SP} PDB: 2z8z_A 2zj6_A 2zj7_A
Length = 617
Score = 46.2 bits (109), Expect = 2e-05
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 200 GSLGNNIYKIEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKN 259
+ G ++ + ++ DD+ ++ T+ +S+ G
Sbjct: 439 DANGGISITRDIGSIVTKEPGFLWGLFKDDVTH-SVTASGLKVGSNVTQYDASVKGTNGA 497
Query: 260 MTIAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYA 311
T+ H + + G GND +IG N+VF +GND+ + G DTF +
Sbjct: 498 DTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNG 549
Score = 36.9 bits (85), Expect = 0.013
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 273 GSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308
G+ +IG+ +N++ SGND +G +G DTF
Sbjct: 364 THKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFR 399
Score = 36.2 bits (83), Expect = 0.024
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 244 DLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSG 303
+L+ + ++ + N H ++GS ND++ G S N+ +GND F G
Sbjct: 344 NLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGG 403
Query: 304 LDTFF 308
+
Sbjct: 404 YNVIL 408
Score = 35.8 bits (82), Expect = 0.033
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 273 GSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFY 309
G SGND + G + N+ F + G +V G +G +T
Sbjct: 382 GGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDL 418
Score = 34.6 bits (79), Expect = 0.077
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 270 SVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFY 309
+ G +GND NV +GN+ D ++TF +
Sbjct: 388 YLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDF 427
Score = 31.9 bits (72), Expect = 0.51
Identities = 9/95 (9%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 219 IQTIYDSGGDDLLD-----LTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVG 273
D G+ + +++ + + + + + ++ +
Sbjct: 425 FDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGLKVGSNV 484
Query: 274 SSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFF 308
+ + V G + + +G D G G D
Sbjct: 485 TQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLI 519
Score = 30.8 bits (69), Expect = 0.94
Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 14/153 (9%)
Query: 221 TIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVV 280
G +IG N + + G N T G +V+
Sbjct: 361 NAETHKGST----FIIGSDSNDLIQGGSGNDYLEGRAGNDTF---------RDGGGYNVI 407
Query: 281 IGNSANNVFFESSGNDVFD-GSSGLDTFFYYAPSYLYKIYRFENAIIVYDANEHKQDFLS 339
+G + NN + FD + G + + I R +I+ + F
Sbjct: 408 LGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKD 467
Query: 340 DVERLRFADQCIDSVNVKQRSILEYTASYEDLI 372
DV A NV Q + D +
Sbjct: 468 DVTHSVTASGLKVGSNVTQYDASVKGTNGADTL 500
Score = 30.8 bits (69), Expect = 1.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 271 VVGSSGNDVVIGNSANNVFFES--SGNDVFDGSSGLDTF 307
VG +GND++ + F + G D G + D
Sbjct: 527 FVGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKL 565
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 42.7 bits (100), Expect = 2e-04
Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 30/147 (20%)
Query: 37 THRLSFDITELNPNAQE-VARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92
T+ + +L + A WS V LTF I+F + +G
Sbjct: 103 TYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHG--DGY 160
Query: 93 RYDSR-------YFME------INFDKADVWRYGIGKGTILSHN-----ALHEIGHALGL 134
+D + + +FD ++W G G A H G
Sbjct: 161 PFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGR 220
Query: 135 MH-----PGSYNGGYPVYGVDNDYEND 156
+ G G P +Y+ D
Sbjct: 221 SYSACTTDGRS-DGLPWCSTTANYDTD 246
Score = 34.2 bits (78), Expect = 0.11
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 103 NFDKADVWRYGIGKGTILSHNALHEIGHALGLMH 136
NFD W + +G L A HE GHALGL H
Sbjct: 359 NFDSDKKWGFCPDQGYSLFLVAAHEFGHALGLDH 392
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.9 bits (98), Expect = 5e-04
Identities = 73/521 (14%), Positives = 147/521 (28%), Gaps = 229/521 (43%)
Query: 212 QQKDSPFIQTI---YDS-GGDD----LLDLTL--IGGVKNYIDLNTESWSSIGGYEKNMT 261
Q ++ F + + + DD +L +G Y+ + S +G ++
Sbjct: 32 QLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLG----YV-SSLVEPSKVGQFD---- 81
Query: 262 IAQHTVIESVVGSSGNDVVIGNSANNVFFESS---GNDV------FDGSSGLDT------ 306
V+ + FE+ GND+ + DT
Sbjct: 82 ----QVLNLCLT---------------EFENCYLEGNDIHALAAKLLQEN--DTTLVKTK 120
Query: 307 ----FFYYAPSYLYK-IYRFENAIIVYDANEHKQDFLSDVERLRFA--------DQCIDS 353
+ A + + N+ + E +L A D +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-------QL-VAIFGGQGNTDDYFEE 172
Query: 354 VNVKQRSILEYTASY----EDLIQVIGQDVFESMKHFYEFGLSEGRDITFDSYLYLGSYD 409
+ R + Y +Y DLI+ + E L + + G
Sbjct: 173 L----RDL--YQ-TYHVLVGDLIKFSA-------ETLSE--LIR-TTLDAEKVFTQGL-- 213
Query: 410 DLRNVFGSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAFADAP------DLV 463
++ ++ + PD +Y+ S P ++
Sbjct: 214 NI------------LEWLEN--PSNT-PD----KDYLLS----------IPISCPLIGVI 244
Query: 464 QVGKDHFS----NFGCEEGRFVTFDSYLYLGSYDDLRNVFGSDRG---AAARHYITHGVK 516
Q+ H+ G G ++ L+ G +G A A +
Sbjct: 245 QLA--HYVVTAKLLGFTPGELRSY-----------LKGATGHSQGLVTAVA-------IA 284
Query: 517 EGRNPDAF-----KALE---YIA--SHEDLINAFAD---APDLVQAGKDHFSNFGYEEGR 563
E + ++F KA+ +I +E A+ + P +++ ++ EG
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLEN------NEGV 334
Query: 564 -----SITFNPDLYLTSYDDLWNVFGSDRSAAAQHYIT----HGMKEGRALGIS----GM 610
SI+ +L + + + Q Y+ H + G+ + IS
Sbjct: 335 PSPMLSIS---NL---TQEQV------------QDYVNKTNSH-LPAGKQVEISLVNGAK 375
Query: 611 QF------KSVMNLSEKSRD-KADLSLS-----FDHKKVDL 639
+S+ L+ R KA L F +K+
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Score = 38.4 bits (89), Expect = 0.005
Identities = 93/594 (15%), Positives = 164/594 (27%), Gaps = 248/594 (41%)
Query: 35 LTTHRLSFDITELNPNAQ----EVARWALGEWSKVVDLTFEET-----SIHSDIKFISSN 85
L L + + + P+ +V L E FE IH+ +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--------FENCYLEGNDIHA---LAAKL 108
Query: 86 NGYVCTPRYDSRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPG----SYN 141
T ++ ++ A +
Sbjct: 109 LQENDTTLVKTKELIKNYI------------------TARIMAKRPFDKKSNSALFRAVG 150
Query: 142 GG----YPVYGVDNDYENDSFLTSVMSYFMPQDSMMDASFGYCA-TPMVSDIVA------ 190
G ++G + ++ YF + + D Y +V D++
Sbjct: 151 EGNAQLVAIFGGQGNTDD---------YF---EELRDL---YQTYHVLVGDLIKFSAETL 195
Query: 191 ---------VQKIYGAPKGSLGNNIYK---IEVQQKDSPFIQTIYDSGGDDLLDLTLIGG 238
+K++ +G L NI + D ++ +I S LIG
Sbjct: 196 SELIRTTLDAEKVF--TQG-L--NILEWLENPSNTPDKDYLLSIPIS-------CPLIG- 242
Query: 239 VKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIGNSANNVFFE-SSGNDV 297
I L A + V ++G + ++ + + ++G+
Sbjct: 243 ---VIQL-----------------AHYVVTAKLLGFTPGEL-------RSYLKGATGH-- 273
Query: 298 FDGSSGL---------DTF--FYY----APSYLYKI-YRFENAI--------IVYDANEH 333
S GL D++ F+ A + L+ I R A I+ D+ E+
Sbjct: 274 ---SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 334 KQDF----LS--DVERLRFADQCIDSVNVKQRSILEYTASYEDLIQVIGQDVFESMKHFY 387
+ LS ++ + + D ++ N + K
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDY-VNKTN-----------------SHLPAG-----KQVE 367
Query: 388 EFGLSEGRDITF------DSYLY-LGSYDDLRNVFGSDRGAAARHYITHGVKEGRNPDAF 440
L G S LY L LR A + G+ + R P F
Sbjct: 368 -ISLVNGAK-NLVVSGPPQS-LYGLNLT--LRKA-----KAPS------GLDQSRIP--F 409
Query: 441 --KALEYIASHEDL-INA-F-----ADAPDLVQVGKDHFSNFGCEEGRF--------V-- 481
+ L++ S+ L + + F A DL+ KD F V
Sbjct: 410 SERKLKF--SNRFLPVASPFHSHLLVPASDLIN--KD----LVKNNVSFNAKDIQIPVYD 461
Query: 482 TFDSYLYLGSYDDLRNVFGSDRGAAARHYITHG-VK-EGRNPDAFKALEYIASH 533
TFD GS DLR + I VK E ++ A+H
Sbjct: 462 TFD-----GS--DLRVL-SGSISERIVDCIIRLPVKWE-------TTTQFKATH 500
Score = 34.1 bits (78), Expect = 0.11
Identities = 75/506 (14%), Positives = 138/506 (27%), Gaps = 245/506 (48%)
Query: 265 HTVIESVVGSSG------NDVV-------------IGNSANNVFFESSGND------VFD 299
H + ++ + +++ +N+ F + G +F
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 300 GSSGLDTFF------Y--YAP----------SYLYKIYRF-ENAIIVYDANEHKQDFLSD 340
G D +F Y Y L ++ R +A V+ Q +
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-----TQGL--N 214
Query: 341 VER-LRFADQCIDSVNVKQRSILEYTASYEDLIQV----IG--QDVFESMKHFY----EF 389
+ L D +Y S I + IG Q + H+
Sbjct: 215 ILEWLENPSNTPDK---------DYLLS----IPISCPLIGVIQ-----LAHYVVTAKLL 256
Query: 390 GLSEGRDITFDSYLYLGSYDDLRNVF----GSDRG---AAARHYITHGVKEGRNPDAF-- 440
G + G +LR+ G +G A A + E + ++F
Sbjct: 257 GFTPG---------------ELRSYLKGATGHSQGLVTAVA-------IAETDSWESFFV 294
Query: 441 ---KALE---YIA--SHEDLINAFAD---APDLVQVGKDHFSNFGCEEGR---------- 479
KA+ +I +E A+ + P +++ ++ EG
Sbjct: 295 SVRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLEN------NEGVPSPMLSISNL 344
Query: 480 -------FVT-FDSYL------YLGSYDDLRNVFGSDRGAAARHYITHG----------- 514
+V +S+L + L N A++ + G
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS----LVN--------GAKNLVVSGPPQSLYGLNLT 392
Query: 515 ---VKEGRNPDA----F--KALEYIASHEDL-INA-F-----ADAPDLVQAGKDHFSNFG 558
K D F + L++ S+ L + + F A DL+
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKF--SNRFLPVASPFHSHLLVPASDLI---NKDL---- 443
Query: 559 YEEGRSITFNP-DLYLTSYD-----DLWNVFGS--------------DRSAA----AQHY 594
+++FN D+ + YD DL + GS A H
Sbjct: 444 --VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 595 I-------------THGMKEGRALGI 607
+ TH K+G G+
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGT--GV 525
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 41.7 bits (97), Expect = 5e-04
Identities = 113/565 (20%), Positives = 202/565 (35%), Gaps = 160/565 (28%)
Query: 149 VDNDYENDSFLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYK 208
V ND +SF+ ++ ++ + ++ +S G TP+ G+ ++
Sbjct: 1071 VQNDILQESFINTMSAWV---NMLLISSSGPIKTPV---------------GACATSVES 1112
Query: 209 IEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYE-KNMTIAQHTV 267
+++ ++TI SG + ++GG Y D E G +E NM +T+
Sbjct: 1113 VDIG------VETIL-SGK---ARICIVGG---YDDFQEE-----GSFEFGNMKATSNTL 1154
Query: 268 IESVVGSSGNDVV-IGNSANNVFFESSGNDV-----FDGSSGLDTFFY----YAPSYLYK 317
E G + ++ + N F E+ G + D + + Y A + K
Sbjct: 1155 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK 1214
Query: 318 IYRFENAI---IVYDANEHKQDFLSDVERLRFADQCIDSVNVKQRSILEYTASYEDLIQV 374
I R A I+ A EH +++A ++ + ++R ++ A +D ++
Sbjct: 1215 IGRSVPAPGKGILTTAREHHSS-------VKYASPNLN-MKYRKRQLVTREAQIKDWVE- 1265
Query: 375 IGQDVFESMK---------HFYEFGLSEGRDITFDSYLYLGSYDDLRNVFGSD------- 418
+ E++K EF L R+I ++ L + + +G+D
Sbjct: 1266 ---NELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRA---AQQQWGNDFYKRDPR 1319
Query: 419 ----RGAAARHYIT---------HGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQV 465
RGA A + +T HG N N A ++++
Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGTSTKANDK---------------NESATINEMMK- 1363
Query: 466 GKDHFSNFGCEEGRFV--TFDSYLYLGSYDDLRNVFGSDRGAA-------ARHYITHGVK 516
+ G EG V F +L G +GAA A + G+
Sbjct: 1364 ------HLGRSEGNPVIGVFQKFLT-----------GHPKGAAGAWMMNGALQILNSGII 1406
Query: 517 EG-RNPD----AFKALEYIASHEDLINAFADAPDLVQAGKDHFSNFGYEEGRSITFNPD- 570
G RN D + EY+ + D V+A FG + G++I +PD
Sbjct: 1407 PGNRNADNVDKILEQFEYVLYPSKTLKT-----DGVRAVSITSFGFGQKGGQAIVVHPDY 1461
Query: 571 LYLTSYDDLWNVFG---SDRSAAAQHYITHGMKEGRALGISGMQFKSVMNLSEK------ 621
LY +D +N + S R +A + +GM + L +S L E
Sbjct: 1462 LYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNK-LFVSKEHAPYTDELEEDVYLDPL 1520
Query: 622 ---SRDKADLSLSFDHKKVDLYTDY 643
S+DK SL+F+ K + Y
Sbjct: 1521 ARVSKDKKSGSLTFNSKNIQSKDSY 1545
>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase,
gelatinase A; 2.66A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Length = 421
Score = 41.2 bits (96), Expect = 8e-04
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 33/101 (32%)
Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMH---PGSYNGGYPVYGVDNDYENDS 157
N+D W + +G L A H+ GHA+GL H PG+ P+Y ++
Sbjct: 347 TANYDDDRKWGFCPDQGYSLFLVAAHQFGHAMGLEHSQDPGALM--APIYTYTKNFR--- 401
Query: 158 FLTSVMSYFMPQDSMMDASFGYCATPMVSDIVAVQKIYGAP 198
+ QD DI +Q++YGA
Sbjct: 402 ---------LSQD----------------DIKGIQELYGAS 417
Score = 35.0 bits (80), Expect = 0.054
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 26/152 (17%)
Query: 37 THRLSFDITELNPNAQE-VARWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92
T+R+ +L+P + A WS V L F I F +G
Sbjct: 94 TYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG--DGY 151
Query: 93 RYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGS 139
+D + + +FD ++W G G + G+A G
Sbjct: 152 PFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEG------QVVRVKYGNADGEYCKFP 205
Query: 140 YNG-GYPVYGVDNDYENDSFLTSVMSYFMPQD 170
+ G + +D FL +Y +D
Sbjct: 206 FLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKD 237
>2qub_A Extracellular lipase; beta roll, alpha/beta hydrolase, helical
hairpin; 1.80A {Serratia marcescens} PDB: 2qua_A
Length = 615
Score = 39.7 bits (92), Expect = 0.002
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 223 YDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIG 282
+ +D + ++ GG + + + + + G++GND +IG
Sbjct: 461 SWLIFNKEVDHQVTAAGLKSDSGLKAYAAATGG-DGDDVLQARSHDAWLFGNAGNDTLIG 519
Query: 283 NS-ANNVFFESSGNDVFDGSSGLDTFFYYA 311
++ N F SG+D+ G +TF +
Sbjct: 520 HAGGNLTFVGGSGDDILKGVGNGNTFLFSG 549
Score = 39.3 bits (91), Expect = 0.003
Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 255 GYEKNMTIAQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYAPSY 314
+ I + + G GND + G +++F ++ G ++ G G + F
Sbjct: 367 THSGPTFIIGSDGNDLIKGGKGNDYLEGRDGDDIFRDAGGYNLIAGGKGHNIFDTQQALK 426
Query: 315 LYKIYRFENAIIVYDANEHKQDFLSDVERLRFADQCIDSVNVKQRSILEYTASYEDLIQV 374
++ N + + DA I ++ K+ S L + + +
Sbjct: 427 NTEVAYDGNTLYLRDAKGGITLADD-----------ISTLRSKETSWLIFNKEVDHQVTA 475
Query: 375 IGQDVFESMKHFYEFGLSEGRDITF----DSYLYLGSYDD 410
G +K + +G D+ D++L+ + +D
Sbjct: 476 AGLKSDSGLKAYAAATGGDGDDVLQARSHDAWLFGNAGND 515
Score = 39.3 bits (91), Expect = 0.003
Identities = 16/107 (14%), Positives = 34/107 (31%)
Query: 203 GNNIYKIEVQQKDSPFIQTIYDSGGDDLLDLTLIGGVKNYIDLNTESWSSIGGYEKNMTI 262
+ EV + G D++ + + + + +
Sbjct: 422 QQALKNTEVAYDGNTLYLRDAKGGITLADDISTLRSKETSWLIFNKEVDHQVTAAGLKSD 481
Query: 263 AQHTVIESVVGSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFY 309
+ + G G+DV+ S + F ++GND G +G + F
Sbjct: 482 SGLKAYAAATGGDGDDVLQARSHDAWLFGNAGNDTLIGHAGGNLTFV 528
Score = 32.7 bits (74), Expect = 0.30
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 271 VVGSSGNDVVIGNSANNVFFES--SGNDVFDGSSGLDTFFY 309
VG SG+D++ G N F S G D G + D +
Sbjct: 527 FVGGSGDDILKGVGNGNTFLFSGDFGRDQLYGFNASDKLVF 567
>2agm_A Poly(beta-D-mannuronate) C5 epimerase 4; parallel beta-roll,
isomerase; NMR {Azotobacter vinelandii}
Length = 167
Score = 37.3 bits (86), Expect = 0.010
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 273 GSSGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYAPSYLYKIYRFENAIIVYD 329
G SG D + G + +++ +G D G +G DTF + A Y+ ++ D
Sbjct: 18 GGSGADRLDGGAGDDILDGGAGRDRLSGGAGADTFVFSAREDSYRTDTAVFNDLILD 74
Score = 33.1 bits (75), Expect = 0.19
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 275 SGNDVVIGNSANNVFFESSGNDVFDGSSGLDTFFYYA 311
S + ++G ++ SG D DG +G D A
Sbjct: 2 SDGEPLVGGDTDDQLQGGSGADRLDGGAGDDILDGGA 38
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 34.2 bits (78), Expect = 0.096
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 45 TELNPNAQEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYDSRYFMEINF 104
E + N + V A+ + + F SI +D I + +G + ++
Sbjct: 28 GEFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIENKDGCYSAIGR-TGGKQVVSL 86
Query: 105 DKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYN 141
++ GI A HE+ HALG H S +
Sbjct: 87 NRKGCVYSGI---------AQHELNHALGFYHEQSRS 114
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, zinc, disulfide bond, hydrolase,
metal-binding, metalloprotease, zymogen; 1.45A {Astacus
astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A
1qji_A* 1qjj_A
Length = 235
Score = 33.9 bits (77), Expect = 0.11
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 42 FDITELNPNAQEVARWALGEWSKVVDLTFEETSIHSD-IKFISSNNGYVCTPRYDSRYFM 100
+ ++ Q + E + + F + SD ++ +S +G S
Sbjct: 51 YTFAGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWSYVGRISGA-Q 109
Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHP 137
+++ G + LH + HA+G H
Sbjct: 110 QVSL---------QANGCVYHGTILHALMHAIGFYHE 137
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 33.5 bits (76), Expect = 0.15
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 101 EINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNG-GYPVYGVDNDYE 154
N+D W + +G L A H GHA+GL H P+Y ++
Sbjct: 349 TANYDDDRKWGFCPDQGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFR 403
Score = 28.1 bits (62), Expect = 6.7
Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 38/166 (22%)
Query: 37 THRLSFDITELNPNAQEVA-RWALGEWSKVVDLTFEETSIHS---DIKFISSNNGYVCTP 92
T+R+ +L+P + A A WS V L F I F +G
Sbjct: 96 TYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHG--DGY 153
Query: 93 RYD-------------SRYFMEINFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGS 139
+D + + +FD ++W G G ++ + G P
Sbjct: 154 PFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGE--GQVVRVKYGNADGEY--CKFPFL 209
Query: 140 YNGGYPVYGVDNDYENDSFLTSVMSYFMPQDSMM-----DASFGYC 180
+NG E +S + S S D +G+C
Sbjct: 210 FNG----------KEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFC 245
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 33.2 bits (75), Expect = 0.17
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 46 ELNPNAQEVARWALGEWSKVVDLTFEETSIHSDIK-FISSNNGYVCTPRYDSRYFMEINF 104
+ + V R A+ W K +TF E + F G I+
Sbjct: 22 NFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAIS- 80
Query: 105 DKADVWRYGIGKGTILSHNALHEIGHALGLMHP 137
IGK +HE+GH +G H
Sbjct: 81 ---------IGKNCDKFGIVVHELGHVVGFWHE 104
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 31.5 bits (71), Expect = 0.62
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 32/131 (24%)
Query: 19 RDQYWSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEWSKVVDLTFEETSIHSD 78
R+QY + + + R I + E K++ +T D
Sbjct: 48 RNQYDAVKVLLK---LDMFRRRMPQIFKPADMDLEFYNKFNHLHEKILLVT------PGD 98
Query: 79 IKFISSNNGYVC-------------TPRYDSRYFMEINFDKADVWRYGIGKGTILSHNAL 125
+ + + +V R + ++ + D I K
Sbjct: 99 L-YEPLAD-FVFGLAYPKLGVAIVSPHRLQNEFYGKYADD--SALIDRIVKE------GA 148
Query: 126 HEIGHALGLMH 136
HEIGH GL H
Sbjct: 149 HEIGHLFGLGH 159
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel,
virus; NMR {Bacillus phage SPP1}
Length = 109
Score = 31.1 bits (70), Expect = 0.80
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 4 IKPVYTTERIADHLLRDQYWSNYFIRYKPDVLTTHRLSFDITELNPNAQEVARWALGEW 62
++P+ E L+ N + Y + R+ + + V L E
Sbjct: 38 VQPISQEEYYKAQQLQTPIGYNIYTPYDDRIDKKMRVIYRGKIVTFIGDPVDLSGLQEI 96
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
Length = 456
Score = 30.4 bits (67), Expect = 1.1
Identities = 27/235 (11%), Positives = 54/235 (22%), Gaps = 14/235 (5%)
Query: 55 ARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYDSRYFMEINFDKADVWRYGI 114
+K+ + + +DI ++ G + R +
Sbjct: 177 GADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLE 236
Query: 115 GKGTILSHNALHEIGHALGLMH----PGSYNGGYPVYGVDNDYENDSFLTSVMSYFMPQD 170
L G L G+ G V N +
Sbjct: 237 RVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGC 296
Query: 171 SMMDASFGYCATPMVSDIVAVQKIYGAPKGSLGNNIYKIEVQQKDSPFIQTIYDSGGDDL 230
+ ++ G +V + A G + +
Sbjct: 297 VIKNSVIGDDCEISPYTVVEDANLAAACTI--GPFARLRPGAELLEGAHVGNFVEMKKAR 354
Query: 231 LDLTLIGGVKNYIDLNTESWSSIGGYEKNMTIAQHTVIESVVGSSGNDVVIGNSA 285
L G Y+ + IG N+ I T+ + G++ +IG+
Sbjct: 355 LGKGSKAGHLTYLGD-----AEIG---DNVNIGAGTITCNYDGANKFKTIIGDDV 401
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 29.2 bits (65), Expect = 2.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 124 ALHEIGHALGLMH 136
HE+GH GL H
Sbjct: 143 LTHELGHTFGLGH 155
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein
structure initiative; 2.09A {Enterococcus faecium DO}
SCOP: a.80.1.2 PDB: 2qw6_A
Length = 204
Score = 29.1 bits (65), Expect = 3.1
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 500 GSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQAGKDHFSNFGY 559
GSD AA HY+ V+ G + + + +ED+ A G
Sbjct: 27 GSDVDAAL-HYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84
Query: 560 EEGRSITFNPDLYLTSYDDLWNVFGSDRSAAAQHYITHGMKE 601
E R + + L S +S +A + + +
Sbjct: 85 PEARIPLADVVVDLCL---------SPKSNSAYMALDAALAD 117
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 28.9 bits (64), Expect = 3.6
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 411 LRNVFGSDRGAAARHYITHGVKEGRNPD----AFKALEYIASHEDLINA 455
R VF D R I + + GRN + +AL+++ H ++ A
Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPA 175
Score = 28.9 bits (64), Expect = 3.6
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 495 LRNVFGSDRGAAARHYITHGVKEGRNPD----AFKALEYIASHEDLINA 539
R VF D R I + + GRN + +AL+++ H ++ A
Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPA 175
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.50A
{Prochlorococcus marinus subsp} SCOP: a.80.1.2
Length = 213
Score = 28.7 bits (64), Expect = 3.8
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 416 GSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAFADAPDLVQVGKDHFSNFGC 475
GSD A +++ + V+ G +P+ I++ ED+ A +A +VQ D F G
Sbjct: 48 GSDPDATL-YWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106
Query: 476 EEGRFVTFDSYLYLGS-------------YDDLRNVFGSDRGAAARHYITHGVKEGRNPD 522
EG F + LYL + ++ S ++ ++ +
Sbjct: 107 PEGLFFLSQASLYLAISPKSNSTKSIFKAMEAIKATNVSLVPNHLKNNASNYLNPHNYQG 166
Query: 523 AFKALEY 529
+ EY
Sbjct: 167 KWLQQEY 173
>3h9r_A Activin receptor type-1; structural genomics, structural genomics
consortium, SGC, ATP-binding, disease mutation,
glycoprotein; HET: TAK PG4; 2.35A {Homo sapiens}
Length = 330
Score = 28.6 bits (63), Expect = 4.9
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 64 KVVDLTFEETSIHSDIKFISSNNGYVCTPRY-------DSRYFMEINFD-KADVWRYGI 114
+ DL S + NN V T RY ++ + + D+W +G+
Sbjct: 182 CIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGL 240
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase;
1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB:
1kuh_A
Length = 132
Score = 28.6 bits (64), Expect = 5.1
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 21/73 (28%)
Query: 113 GIGKGTIL-------SHNAL----HEIGHALGLMHPGSYN--------GGYPVYGVDNDY 153
G G+G I +++ HE GH LGL P Y GG P N Y
Sbjct: 59 GHGRGYIFLDYQQNQQYDSTRVTAHETGHVLGL--PDHYQGPCSELMSGGGPGPSCTNPY 116
Query: 154 ENDSFLTSVMSYF 166
N + V + +
Sbjct: 117 PNAQERSRVNALW 129
>3mmp_G RNA-directed RNA polymerase beta chain; RDRP,HOST-factor complex,
translation, transferase; HET: PXN; 2.50A
{Enterobacteria phage qbeta}
Length = 589
Score = 28.3 bits (62), Expect = 5.3
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 481 VTFDSYLYLGSYDDLRNVFGSDRGAAARHYITHGVKEGRNPDAFKALEYIASHEDLINAF 540
+ + L L +DL +G + I+ + PD F+ + Y+ + ++++ +
Sbjct: 23 IEVEGNLALSIANDLLLAYGQSPFNSEAECISFSPRFDGTPDDFR-INYLKA--EIMSKY 79
Query: 541 ADAPDLVQAGKDHFSNFGYEEGRSITFNPDLYLTSYDDLWNVFGSDR 587
D + + F E N LY Y + +N +
Sbjct: 80 DDFSLGIDTEAVAWEKFLAAEAECALTNARLYRPDYSEDFNFSLGES 126
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 28.3 bits (62), Expect = 6.5
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 368 YEDL-IQVIGQDVFESMKHFYEFGLSE 393
Y ++ ++V G DV + ++HF L +
Sbjct: 39 YNNIPVKVTGSDVPQPIQHFTSADLRD 65
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 27.8 bits (61), Expect = 9.2
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 519 RNPDAFKALEYIASHEDLINAFA----DAPDLVQAGKDHFSNFGYEEGR-SITFNPDLYL 573
+ F+ L I I ++ D +L Q N +G+ +NP L L
Sbjct: 377 VSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCL 436
Query: 574 TSYDDLWNVFGS 585
+ + V G+
Sbjct: 437 SEIHKMEEVSGT 448
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A*
Length = 291
Score = 27.3 bits (60), Expect = 9.8
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 64 KVVDLTFEETSIHSDIKFISSNNGYVCTPRY-DSRYFMEINFD-KADVWRYGIGKGTILS 121
K+ D ++ +D + + ++ F K+DVW +G+ S
Sbjct: 157 KISDFGLS-KALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 215
Query: 122 H 122
+
Sbjct: 216 Y 216
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,097,086
Number of extensions: 295965
Number of successful extensions: 1075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 87
Length of query: 665
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 566
Effective length of database: 3,293,074
Effective search space: 1863879884
Effective search space used: 1863879884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)