HHsearch alignment for GI: 254780386 and conserved domain: COG0845
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane].
Probab=95.10 E-value=0.029 Score=33.38 Aligned_cols=129 Identities=21% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCC--CCEEEEEEECHHHHHHCCCCCCEEEEEEECC
Q ss_conf 32212222212345554116873121201222124445542103355--6504775326223110158983179998128
Q gi|254780386|r 279 KLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHS--KLTYIRAKVTPKQIQHVKKGYTATVRFPHYA 356 (440)
Q Consensus 279 ~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~--~~l~v~~~v~~~di~~i~~Gq~v~i~~~a~~ 356 (440)
T Consensus 167 ~~~~~~~~~~~~~i~a~~~g~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (372)
T COG0845 167 ALASAKLNLEYTRITAPISGVIGARLV-RVGQLVSAGQALATIADLDPAAALWVLAAVLERDLLAVKVGQKVTVTLAAGP 245 (372)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCC-CCCCEECCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999987554211762441000004-6442103564045676431312100126546777875115886999962777
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 87544399999997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 357 DIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 357 ~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
T Consensus 246 ~~---~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~----~~~l~~g~~~~~~i~~~~~~ 297 (372)
T COG0845 246 DQ---LFAGTVEFISPTVDATTRT------VTVRAEVPNPN----GDALKPGMFVEVRIEVGDGK 297 (372)
T ss_pred CE---EECEEEEEECCCCCCCCCE------EEEEEEECCCC----CCCCCCCEEEEEEEECCCCC
T ss_conf 50---4120578850564675415------99999984787----65313755999999537757