HHsearch alignment for GI: 254780386 and conserved domain: PRK10476
>PRK10476 multidrug resistance protein MdtN; Provisional.
Probab=100.00 E-value=5.6e-42 Score=298.47 Aligned_cols=318 Identities=17% Similarity=0.181 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHH
Q ss_conf 99999999999999987640671258999799995387389846888689999857898933697899996489988899
Q gi|254780386|r 18 KRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLID 97 (440)
Q Consensus 18 ~~~~~~~~~~~~~~~~w~~~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~ 97 (440)
T Consensus 14 ~~i~~~~~~~~~~~~~~~~~~~~~~~~TddA~V~--~~iv~Is~~VsG~V~~V~V~egq~VkkGq~L~~LD~~~~~~~v~ 91 (348)
T PRK10476 14 KVIALAIVALALVALVYVIWRTDSAPSTDDAYID--ADVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRPYELTVA 91 (348)
T ss_pred EEHHHHHHHHHHHHHHHHHEECCCEEECCCEEEE--EEEEEEECCCCEEEEEEEECCCCEECCCCEEEEECCHHHHHHHH
T ss_conf 2278999999999987651324640143625999--79999934344599999946999864897899977689999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 98743433233210012333322211455542235688887765546788654333655420011222112210022321
Q gi|254780386|r 98 LKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLN 177 (440)
Q Consensus 98 ~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (440)
T Consensus 92 ~A~A~l~~a~a~l~~~~~~~~~~~a~~~-------~a~a~---------------------------------------- 124 (348)
T PRK10476 92 QAQADLALADAQLDTTQRSVDAERSNAA-------SANEQ---------------------------------------- 124 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----------------------------------------
T ss_conf 9999999999999999878888898999-------99999----------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01122322222210233332221012222221110000111002466653101223322222222222100012233321
Q gi|254780386|r 178 RLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFAN 257 (440)
Q Consensus 178 ~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~ 257 (440)
T Consensus 125 -------~~~A~a~~~~a~~~~~R~~~L~~~g~vS~~~ld~a~~~~~~A~a~l~~a~~q~~~a~~~-------------- 183 (348)
T PRK10476 125 -------VERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAA-------------- 183 (348)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_conf -------99999999999999999998876699799999999999999999999999999999875--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHH
Q ss_conf 12332221222222221222332212222212345554116873121201222124445542103355650477532622
Q gi|254780386|r 258 YLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPK 337 (440)
Q Consensus 258 ~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~ 337 (440)
T Consensus 184 -----~~~~~~~~a~v~~a~a~L~~A~~~L~~t~I~AP~dG~V~~~~v-~~G~~V~pG~pl~~lv-~~~~~wV~An~~Et 256 (348)
T PRK10476 184 -----VGGVDALVAQRAAREAALAIAELHLEDTTVRAPFDGRVVGLKV-SVGEFAAPMQPIFTLI-DTDHWYAIANFRET 256 (348)
T ss_pred -----HCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEEEC-CCCCEECCCCEEEEEE-ECCCEEEEEEECHH
T ss_conf -----4015668999999999999999878558997789849998866-9998778998489999-68957999993277
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCC---------CCCCCC------EEEEEEEEECHHHCCCCC
Q ss_conf 31101589831799981288754439999999713344467---------776551------189999993501125678
Q gi|254780386|r 338 QIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQD---------NNLQTQ------EYYEVILKITDLAFSDNN 402 (440)
Q Consensus 338 di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~---------~~~~~~------~~y~v~i~~~~~~~~~~~ 402 (440)
T Consensus 257 ~l~~v~~Gq~v~I~~Da~p~~---~f~G~V~sI~~g~~~~~~~~~~~~lp~~natgn~~Kv~QRvPVrI~~d~~~----~ 329 (348)
T PRK10476 257 DLKNIRVGDCATVYSMIDRGR---PIEGKVDSIGWGVLPDDGGNVPRGLPYVPRSINWVRVAQRFPVRIMLDKPD----P 329 (348)
T ss_pred HHCCCCCCCEEEEEEECCCCC---EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC----C
T ss_conf 825279989899999768997---899999998878778100555445899799987688878985999988997----1
Q ss_pred CEECCCCEEEEEEEECE
Q ss_conf 51523775699999220
Q gi|254780386|r 403 IELRNGFPAEVLFTAKN 419 (440)
Q Consensus 403 ~~L~~Gm~~~~~I~~~~ 419 (440)
T Consensus 330 ~~lr~G~s~~v~i~tg~ 346 (348)
T PRK10476 330 ELFRIGASAVVELRPGA 346 (348)
T ss_pred CCCCCCCEEEEEEECCC
T ss_conf 01478887899997899