HHsearch alignment for GI: 254780386 and conserved domain: PRK10476

>PRK10476 multidrug resistance protein MdtN; Provisional.
Probab=100.00  E-value=5.6e-42  Score=298.47  Aligned_cols=318  Identities=17%  Similarity=0.181  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHH
Q ss_conf             99999999999999987640671258999799995387389846888689999857898933697899996489988899
Q gi|254780386|r   18 KRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLID   97 (440)
Q Consensus        18 ~~~~~~~~~~~~~~~~w~~~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~   97 (440)
T Consensus        14 ~~i~~~~~~~~~~~~~~~~~~~~~~~~TddA~V~--~~iv~Is~~VsG~V~~V~V~egq~VkkGq~L~~LD~~~~~~~v~   91 (348)
T PRK10476         14 KVIALAIVALALVALVYVIWRTDSAPSTDDAYID--ADVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRPYELTVA   91 (348)
T ss_pred             EEHHHHHHHHHHHHHHHHHEECCCEEECCCEEEE--EEEEEEECCCCEEEEEEEECCCCEECCCCEEEEECCHHHHHHHH
T ss_conf             2278999999999987651324640143625999--79999934344599999946999864897899977689999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             98743433233210012333322211455542235688887765546788654333655420011222112210022321
Q gi|254780386|r   98 LKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLN  177 (440)
Q Consensus        98 ~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (440)
T Consensus        92 ~A~A~l~~a~a~l~~~~~~~~~~~a~~~-------~a~a~----------------------------------------  124 (348)
T PRK10476         92 QAQADLALADAQLDTTQRSVDAERSNAA-------SANEQ----------------------------------------  124 (348)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----------------------------------------
T ss_conf             9999999999999999878888898999-------99999----------------------------------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01122322222210233332221012222221110000111002466653101223322222222222100012233321
Q gi|254780386|r  178 RLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFAN  257 (440)
Q Consensus       178 ~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~  257 (440)
T Consensus       125 -------~~~A~a~~~~a~~~~~R~~~L~~~g~vS~~~ld~a~~~~~~A~a~l~~a~~q~~~a~~~--------------  183 (348)
T PRK10476        125 -------VERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAA--------------  183 (348)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_conf             -------99999999999999999998876699799999999999999999999999999999875--------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECHH
Q ss_conf             12332221222222221222332212222212345554116873121201222124445542103355650477532622
Q gi|254780386|r  258 YLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPK  337 (440)
Q Consensus       258 ~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~~v~~~  337 (440)
T Consensus       184 -----~~~~~~~~a~v~~a~a~L~~A~~~L~~t~I~AP~dG~V~~~~v-~~G~~V~pG~pl~~lv-~~~~~wV~An~~Et  256 (348)
T PRK10476        184 -----VGGVDALVAQRAAREAALAIAELHLEDTTVRAPFDGRVVGLKV-SVGEFAAPMQPIFTLI-DTDHWYAIANFRET  256 (348)
T ss_pred             -----HCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEEEC-CCCCEECCCCEEEEEE-ECCCEEEEEEECHH
T ss_conf             -----4015668999999999999999878558997789849998866-9998778998489999-68957999993277


Q ss_pred             HHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCC---------CCCCCC------EEEEEEEEECHHHCCCCC
Q ss_conf             31101589831799981288754439999999713344467---------776551------189999993501125678
Q gi|254780386|r  338 QIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQD---------NNLQTQ------EYYEVILKITDLAFSDNN  402 (440)
Q Consensus       338 di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~---------~~~~~~------~~y~v~i~~~~~~~~~~~  402 (440)
T Consensus       257 ~l~~v~~Gq~v~I~~Da~p~~---~f~G~V~sI~~g~~~~~~~~~~~~lp~~natgn~~Kv~QRvPVrI~~d~~~----~  329 (348)
T PRK10476        257 DLKNIRVGDCATVYSMIDRGR---PIEGKVDSIGWGVLPDDGGNVPRGLPYVPRSINWVRVAQRFPVRIMLDKPD----P  329 (348)
T ss_pred             HHCCCCCCCEEEEEEECCCCC---EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC----C
T ss_conf             825279989899999768997---899999998878778100555445899799987688878985999988997----1


Q ss_pred             CEECCCCEEEEEEEECE
Q ss_conf             51523775699999220
Q gi|254780386|r  403 IELRNGFPAEVLFTAKN  419 (440)
Q Consensus       403 ~~L~~Gm~~~~~I~~~~  419 (440)
T Consensus       330 ~~lr~G~s~~v~i~tg~  346 (348)
T PRK10476        330 ELFRIGASAVVELRPGA  346 (348)
T ss_pred             CCCCCCCEEEEEEECCC
T ss_conf             01478887899997899