HHsearch alignment for GI: 254780386 and conserved domain: PRK10559
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional.
Probab=100.00 E-value=2.4e-33 Score=240.91 Aligned_cols=266 Identities=13% Similarity=0.224 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHEEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHH
Q ss_conf 6899999999999---9999876406712589997999953873898468886899998578989336978999964899
Q gi|254780386|r 16 SLKRMTLLSIIGI---IGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIET 92 (440)
Q Consensus 16 ~~~~~~~~~~~~~---~~~~~w~~~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~ 92 (440)
T Consensus 8 ~~r~~i~i~~v~~~~~~~~~~w~~~~~~p~--TddAyV~--a~iv~Vsp~VsG~V~eV~V~dnq~VkkGdvL~~ID~~~y 83 (310)
T PRK10559 8 ISRTAITVVLVILAFIAIFNAWVYYTESPW--TRDARFS--ADVVAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRY 83 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCEEEE--EEEEEEECCCCEEEEEEECCCCCEECCCCEEEEECCHHH
T ss_conf 999999999999999999999986268851--6773898--579999366746999999179498769988999876179
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 88899987434332332100123333222114555422356888877655467886543336554200112221122100
Q gi|254780386|r 93 TDLIDLKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMR 172 (440)
Q Consensus 93 ~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (440)
T Consensus 84 ~~al~qA~A~la~~qa~~~~~~---------------------~e---------~-------~R~~~l~~~--------- 117 (310)
T PRK10559 84 QKALAEAEADVAYYQVLAQEKR---------------------QE---------A-------GRRNRLGVQ--------- 117 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HH---------H-------HHHHHHHHH---------
T ss_conf 9999999999999999999999---------------------99---------9-------999986651---------
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22321011223222222102333322210122222211100001110024666531012233222222222221000122
Q gi|254780386|r 173 SIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEAN 252 (440)
Q Consensus 173 ~~~~~~~~l~~~~~~l~~~~~~~~~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~ 252 (440)
T Consensus 118 -------------------------------------aiS~~~ld~a~~~l~~a~------------------------- 135 (310)
T PRK10559 118 -------------------------------------AMSREEIDQANNVLQTVL------------------------- 135 (310)
T ss_pred -------------------------------------HCCHHHHHHHHHHHHHHH-------------------------
T ss_conf -------------------------------------005999999999999999-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 33321123322212222222212223322122222123455541168731212012221244455421033556504775
Q gi|254780386|r 253 LEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIVPHSKLTYIRA 332 (440)
Q Consensus 253 ~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Ivp~~~~l~v~~ 332 (440)
T Consensus 136 ------------------aql~~A~A~l~~A~l~L~~T~I~AP~dG~V~~~~v-~~Gq~V~~Gq~l~slV-~~~~~wV~A 195 (310)
T PRK10559 136 ------------------HQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNV-YTGEFITRGSTAVALV-KKNSFYVLA 195 (310)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEEC-CCCCEECCCCEEEEEE-ECCCEEEEE
T ss_conf ------------------99999999999999887258781798867844554-8898856998589999-689669999
Q ss_pred EECHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCC---------CCCC------EEEEEEEEECHHH
Q ss_conf 326223110158983179998128875443999999971334446777---------6551------1899999935011
Q gi|254780386|r 333 KVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKIDPIISQQDNN---------LQTQ------EYYEVILKITDLA 397 (440)
Q Consensus 333 ~v~~~di~~i~~Gq~v~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~---------~~~~------~~y~v~i~~~~~~ 397 (440)
T Consensus 196 NfkETqL~~ir~Gq~v~I~-~~~p~~---~f~G~V~si~~g~~~~~s~~~~~~LP~~NatgnwvKv~QRvPVrI~lD~~- 270 (310)
T PRK10559 196 YMEETKLEGVRPGYRAEIT-PLGSNR---VLKGTVDSVAAGVTNASSTRDSKGMATIDSNLEWVRLAQRVPVRIRLDNQ- 270 (310)
T ss_pred EECHHHCCCCCCCCEEEEE-EECCCC---EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-
T ss_conf 7052212538999979999-917998---89999998874446632367523389968988748677874179997799-
Q ss_pred CCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 256785152377569999922054
Q gi|254780386|r 398 FSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 398 ~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
T Consensus 271 ---~~~~l~~G~sa~V~i~t~~~~ 291 (310)
T PRK10559 271 ---QGNLWPAGTTATVVITGKQDR 291 (310)
T ss_pred ---CCCCCCCCCEEEEEEECCCCC
T ss_conf ---834126888799999388876