HHsearch alignment for GI: 254780386 and conserved domain: TIGR02063
>TIGR02063 RNase_R ribonuclease R; InterPro: IPR011805 This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in Escherichia coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Not included in this entry are shorter, divergent forms from the Chlamydiae and the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans , .; GO: 0003723 RNA binding, 0004518 nuclease activity.
Probab=91.58 E-value=0.36 Score=26.10 Aligned_cols=53 Identities=26% Similarity=0.400 Sum_probs=42.6
Q ss_pred CCCCCCCCCC-EEEEEEECHH--HHHHCCCCCCEEEEEEECCC-CCCCEEEEEEEEE
Q ss_conf 4210335565-0477532622--31101589831799981288-7544399999997
Q gi|254780386|r 318 LMKIVPHSKL-TYIRAKVTPK--QIQHVKKGYTATVRFPHYAD-IREKKFKAIIEKI 370 (440)
Q Consensus 318 l~~Ivp~~~~-l~v~~~v~~~--di~~i~~Gq~v~i~~~a~~~-~~~~~~~G~V~~I 370 (440)
T Consensus 167 ~~fv~p~D~~~~~~~i~~~~~~~~~~~~~~G~~V~~ei~~~p~~~~~~~~~G~v~~i 223 (755)
T TIGR02063 167 IGFVVPDDKRKIYQDIFIPPESVQILGAKEGDKVLVEITKYPDKKRNRPAEGKVVEI 223 (755)
T ss_pred EEEEEECCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEE
T ss_conf 899820687321424211644310167646868999988617886678625999998