HHsearch alignment for GI: 254780386 and conserved domain: TIGR03007
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345 Members of this entry belong to the family of polysaccharide chain length determinant proteins. They are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the epsH homologue that is the putative exosortase gene..
Probab=96.69 E-value=0.00022 Score=47.57 Aligned_cols=60 Identities=8% Similarity=0.263 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 689999999999999998764067125899979999538738984688868999985789893
Q gi|254780386|r 16 SLKRMTLLSIIGIIGLITWSILLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQI 78 (440)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~V 78 (440)
T Consensus 11 w~~rw~~~~~Aw~V~~~gw~~v~~lP~~Y~a~a~VYVdTqs-vlrpLl~G~--a~~P~~~q~i 70 (510)
T TIGR03007 11 WRRRWLFVAVAWVVMIVGWVVVYVLPDRYEASARVYVDTQS-VLRPLLKGL--AVTPNVDQKI 70 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECCC-HHHHHCCCC--CCCCCHHHHH
T ss_conf 99999999999999998767121406740143688884320-165641667--3438678898